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Bsoft 2.1.4
Bernard's software package
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Bsoft 2.1.4
Bernard's software package
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This is the complete list of members for Bimage, including all inherited members.
| absolute() | Bimage | |
| add(long j, double v) | Bimage | inline |
| add(long j, Complex< double > cv) | Bimage | inline |
| add(double xx, double yy, double zz, long nn, double v) | Bimage | |
| add(double v) | Bimage | |
| add(Bimage *p) | Bimage | |
| add(long nn, Bimage *p) | Bimage | |
| add(Bimage *p, double scale, double shift) | Bimage | |
| add(long nn, Bimage *p, double scale, double shift) | Bimage | |
| align(long ref_num, long window, long step, Bimage *pmask, double hi_res, double lo_res, double shift_limit, double edge_width, double gauss_width, Vector3< long > bin, int mode=0) | Bimage | |
| align2D(Bimage *pref, double res_polar, int ann_min, int ann_max, Bimage *prs_mask, double shift_limit, double angle_limit, fft_plan planf_1D, fft_plan planb_1D, fft_plan planf_2D, fft_plan planb_2D) | Bimage | |
| align2D(Bimage *pref, int ann_min, int ann_max, double res_lo, double res_hi, double shift_limit, double angle_limit) | Bimage | |
| align2D_pps(Bimage *pref, double res_hi, double res_lo, double shift_limit, double angle_limit, fft_plan planf, fft_plan planb) | Bimage | |
| align_fast(long ref_num, Bimage *pmask, double hi_res, double lo_res, double shift_limit, double edge_width, double gauss_width) | Bimage | |
| align_local(long nref, Bimage *pmask, double hi_res, double lo_res, double shift_limit, fft_plan planf, fft_plan planb) | Bimage | |
| align_progressive(long nref, Bimage *pmask, double hi_res, double lo_res, double shift_limit, fft_plan planf, fft_plan planb) | Bimage | |
| align_progressive_fast(long nref, double shift_limit) | Bimage | |
| alloc_size() const | Bimage | inline |
| aniso_average(long ksize, double w) | Bimage | |
| apply_soft_mask(long nn, Bimage *pmask, int fill_type, double fill) | Bimage | |
| arccosine() | Bimage | |
| arcsine() | Bimage | |
| arctangent() | Bimage | |
| arctangent(Bimage *p) | Bimage | |
| assemble_tiles(Bimage *pt, int flag=0) | Bimage | |
| auto_correlate(double hires, double lores) | Bimage | |
| average(long cc, double xf, double yf, double zf, long nn, double iscale) | Bimage | |
| average() | Bimage | inline |
| average(double d) | Bimage | inline |
| average2D(long cc, double xf, double yf, double zf, long nn, double iscale) | Bimage | |
| average_images() | Bimage | inline |
| average_images(bool sd) | Bimage | |
| average_line(long xx, long yy, long zz, long nn, long len, int dir) | Bimage | |
| average_phase_difference(Bimage *p, double res_hi, double res_lo, int weighting=1) | Bimage | |
| back_project(Bimage *p, double resolution, double axis, fft_plan planf, fft_plan planb) | Bimage | |
| background(long nn) | Bimage | inline |
| background(long nn, double bkg) | Bimage | inline |
| background(double bkg) | Bimage | inline |
| bar(Vector3< double > start, Vector3< double > end, double width, double edge_width, int fill_type=0, double fill=0) | Bimage | |
| bar(long nn, Vector3< double > start, Vector3< double > end, double width, double edge_width, int fill_type=0, double fill=0) | Bimage | |
| Bimage() | Bimage | |
| Bimage(const Bimage &p) | Bimage | |
| Bimage(Bstring &fn, int readdata, int img_select) | Bimage | |
| Bimage(DataType type, CompoundType ctype, long nx, long ny, long nz, long nn) | Bimage | |
| Bimage(DataType type, CompoundType ctype, Vector3< long > size, long nn) | Bimage | |
| Bimage(DataType type, CompoundType ctype, vector< long > size, long nn) | Bimage | |
| Bimage(DataType type, long nc, long nx, long ny, long nz, long nn) | Bimage | |
| Bimage(DataType type, long nc, Vector3< long > size, long nn) | Bimage | |
| Bimage(Matrix &mat, long scale) | Bimage | |
| bin(long b) | Bimage | inline |
| bin(Vector3< long > bk) | Bimage | |
| bin_around_origin(int bin) | Bimage | |
| bin_copy(long b) | Bimage | inline |
| bin_copy(Vector3< long > bk) | Bimage | |
| blend(Bimage *p, long number) | Bimage | |
| blobs(double threshold, double min_size, double max_size, double setvalue, int sign) | Bimage | |
| calculate_background(long nn, int flag) | Bimage | |
| calculate_background(int flag=0) | Bimage | |
| calculate_background(Bimage *pmask, long nn, int flag=0) | Bimage | |
| calculate_background(Bimage *pmask, int flag=0) | Bimage | |
| cartesian_to_cylindrical(long nannuli, long nphi, int flag=0) | Bimage | |
| cartesian_to_spherical(long nannuli, long nphi, long ntheta) | Bimage | |
| catenate(long m, Bimage **p) | Bimage | |
| ccmap_confidence(long nn) | Bimage | |
| center(int fill_type=0, double fill=0) | Bimage | |
| center_wrap() | Bimage | |
| central_section(Matrix3 mat, double resolution, FSI_Kernel *kernel, double wavelength=0) | Bimage | |
| change_symmetry(Bsymmetry &symold, Bsymmetry &symnu, double radius, double z_slope) | Bimage | |
| change_transform_size(Vector3< long > nusize) | Bimage | |
| change_type(char letter) | Bimage | |
| change_type(char *string) | Bimage | |
| change_type(DataType nutype) | Bimage | |
| channels() | Bimage | inline |
| channels(long cc) | Bimage | inline |
| channels_to_images() | Bimage | |
| check() | Bimage | |
| check_compoundtype(long nc, CompoundType ct) | Bimage | |
| check_if_same_image_size(Bimage *p) | Bimage | |
| check_if_same_size(Bimage *p) | Bimage | |
| check_neighbors(long idx) | Bimage | |
| check_point_group(Bstring &check_string) | Bimage | |
| check_resolution(double &resolution) | Bimage | |
| check_sampling() | Bimage | |
| chirp(double freq_scale, double freq_shift=0) | Bimage | |
| clear() | Bimage | inline |
| cmyk(long j) | Bimage | |
| cmyk_to_rgb() | Bimage | |
| color_blue(double cmin, double cmax, int flag=0) | Bimage | |
| color_combine(Bimage *p) | Bimage | |
| color_green(double cmin, double cmax, int flag=0) | Bimage | |
| color_red(double cmin, double cmax, int flag=0) | Bimage | |
| color_spectrum(double cmin, double cmax) | Bimage | |
| color_to_simple() | Bimage | |
| combine_channels(long nc, CompoundType ct=TSimple) | Bimage | |
| combine_ewald() | Bimage | |
| combined_complex_product() | Bimage | |
| combined_complex_product(Bimage *pmask) | Bimage | |
| combined_complex_product(double hires, double lores, Bimage *pmask=NULL) | Bimage | |
| combined_complex_product_implicit_mask(double hires, double lores) | Bimage | |
| combined_phase_product(double hires, double lores, Bimage *pmask=NULL) | Bimage | |
| compatible(Bimage *p) | Bimage | |
| complex(long j) | Bimage | |
| complex_apply_dual_mask(Bimage *pmask) | Bimage | |
| complex_apply_mask(Bimage *pmask) | Bimage | |
| complex_apply_negative_mask(Bimage *pmask) | Bimage | |
| complex_bandpass(double hires, double lores) | Bimage | |
| complex_conjugate() | Bimage | |
| complex_conjugate_product(Bimage *p, int norm=0) | Bimage | |
| complex_conjugate_product_one2many(Bimage *p) | Bimage | |
| complex_convert(ComplexConversion conv) | Bimage | |
| complex_invert() | Bimage | |
| complex_multiply(Bimage *p) | Bimage | |
| complex_normalize() | Bimage | |
| complex_power() | Bimage | |
| complex_product(Bimage *p) | Bimage | |
| complex_split() | Bimage | |
| complex_to_amplitudes() | Bimage | |
| complex_to_imaginary() | Bimage | |
| complex_to_intensities() | Bimage | |
| complex_to_phases() | Bimage | |
| complex_to_real() | Bimage | |
| complex_to_signed_amplitudes() | Bimage | |
| compound_type() | Bimage | inline |
| compound_type(CompoundType ct) | Bimage | |
| compound_type_size() | Bimage | inline |
| compound_type_string() | Bimage | |
| convert_to_helix(double helix_rise, double helix_angle, Vector3< double > offset) | Bimage | |
| convolve(Bimage *pkernel) | Bimage | |
| convolve_chunk(Bimage *pkernel, float *nudata, long i, long len) | Bimage | |
| coordinates(long i, long &nx, long &ny, long &nz) | Bimage | inline |
| coordinates(long i, long &nx, long &ny, long &nz, long &nn) | Bimage | inline |
| coordinates(long i, long &nc, long &nx, long &ny, long &nz, long &nn) | Bimage | inline |
| coordinates(long i) | Bimage | inline |
| copy() | Bimage | |
| copy(long nu_nimg) | Bimage | |
| copy_header() | Bimage | inline |
| copy_header(long nu_nimg) | Bimage | |
| correct_background(long nn, int flag) | Bimage | |
| correct_background(int flag=0) | Bimage | |
| correct_background(Bimage *pmask, int flag=0) | Bimage | |
| correlate(Bimage *p) | Bimage | |
| correlate(Bimage *p, double rmin, double rmax, Bimage *pmask=NULL, int flag=0) | Bimage | |
| correlate_annuli(Bimage *polref, int ann_min, int ann_max, double ang_min, double ang_max, fft_plan planf, fft_plan planb, double &cc_max) | Bimage | |
| correlation_coefficient(Vector3< double > shift) | Bimage | |
| cosine() | Bimage | |
| cross_correlate(Bimage *p, double hires, double lores, fft_plan planf, fft_plan planb) | Bimage | |
| cross_correlate(Bimage *p, Bimage *pmask=NULL) | Bimage | inline |
| cross_correlate(Bimage *p, double hires, double lores, Bimage *pmask=NULL) | Bimage | |
| cross_correlate(Bimage *p, double hires, double lores, Bimage *pmask, fft_plan planf, fft_plan planb) | Bimage | |
| cross_correlate_fspace(Bimage *p, double hires, double lores, double shift_limit) | Bimage | |
| cross_correlate_two_way(Bimage *p, double hires, double lores, fft_plan planf, fft_plan planb) | Bimage | |
| cross_correlate_validate(Bimage *p, Bimage *pmask) | Bimage | |
| cylinder(Vector3< double > center, double radius, double height, double width, int fill_type=0, double fill=0, bool wrap=0) | Bimage | |
| cylindrical_shells() | Bimage | |
| data_alloc() | Bimage | inline |
| data_alloc(long nbytes) | Bimage | |
| data_alloc(DataType type, CompoundType ctype, long nx, long ny, long nz, long nn) | Bimage | |
| data_alloc_and_clear() | Bimage | inline |
| data_alloc_and_clear(long nbytes) | Bimage | inline |
| data_alloc_and_clear(DataType type, CompoundType ctype, long nx, long ny, long nz, long nn) | Bimage | inline |
| data_assign(unsigned char *nudata) | Bimage | |
| data_delete() | Bimage | |
| data_offset() | Bimage | inline |
| data_offset(long doff) | Bimage | inline |
| data_pointer() | Bimage | inline |
| data_pointer(long offset) | Bimage | inline |
| data_pointer(unsigned char *ptr) | Bimage | inline |
| data_size() | Bimage | inline |
| data_type() | Bimage | inline |
| data_type(DataType dt) | Bimage | inline |
| data_type_bits() const | Bimage | |
| data_type_max() | Bimage | |
| data_type_min() | Bimage | |
| data_type_size() const | Bimage | |
| data_type_string() | Bimage | |
| default_origin() | Bimage | inline |
| defocus_scale(long nn, double df, double df2, double iCL2, int fill_type) | Bimage | |
| delete_images(Bstring list, int retain=0) | Bimage | |
| density(long nn, Vector3< double > coord, double radius, double &sigma) | Bimage | |
| density(long nn, Vector3< double > coord, double radius) | Bimage | inline |
| distort_elliptically(double angle, double shift) | Bimage | |
| divide(Bimage *p, double scale=1, double shift=0) | Bimage | |
| divide_one(Bimage *p, double scale=1, double shift=0) | Bimage | |
| dyad_interpolate(long i, int norm_flag=1) | Bimage | |
| edge(int type, Vector3< long > rect, Vector3< double > start, double width, int fill_type=0, double fill=0) | Bimage | |
| edge(long nn, int type, Vector3< long > rect, Vector3< double > start, double width, int fill_type=0, double fill=0) | Bimage | |
| edge_mask(int type, Vector3< long > rect, Vector3< double > start, double width) | Bimage | |
| enlarge(Vector3< long > scale) | Bimage | |
| erase(string tag) | Bimage | inline |
| ewald_sphere(double volt, double t) | Bimage | |
| exponential() | Bimage | |
| extract(long nn) | Bimage | |
| extract(long n1, long n2) | Bimage | |
| extract(long nn, Vector3< long > coords, Vector3< long > size, int fill_type=0, double fill=0) | Bimage | |
| extract(long nn, Vector3< double > loc, Vector3< long > size, Vector3< double > origin) | Bimage | inline |
| extract(long nn, Vector3< double > loc, Vector3< long > size, Vector3< double > origin, Matrix3 mat) | Bimage | |
| extract(long nn, Vector3< double > loc, Vector3< long > size, Vector3< double > origin, View view) | Bimage | inline |
| extract_edge_difference() | Bimage | |
| extract_filament(long img_num, double width, int axis, long nspline, Vector3< double > *spline) | Bimage | |
| extract_line(long nn, Vector3< double > start, Vector3< double > end, long width) | Bimage | |
| extract_magnify(long nn, Vector3< long > center, Vector3< long > ext_size, double scale) | Bimage | |
| extract_shell(long nn, double minrad, double maxrad) | Bimage | |
| extract_show(int aflag) | Bimage | |
| extract_show_chunk(Bimage *pshow, int aflag, long i, long len) | Bimage | |
| extract_slice(long nz) | Bimage | |
| extract_tetrahedron(Vector3< double > *tet, int fill_type=0, double fill=0) | Bimage | |
| extract_tile_stack(Vector3< long > coords, Vector3< long > tile_size, int fill_type=0, double fill=0) | Bimage | |
| extract_tile_stacks(vector< Vector3< long > > &coords, Vector3< long > tile_size) | Bimage | |
| extract_tiles(long nn, vector< Vector3< long > > &coords, Vector3< long > tile_size) | Bimage | |
| extract_tiles(long nn, Vector3< long > start, Vector3< long > region, Vector3< long > tile_size, Vector3< long > step_size, int exceed) | Bimage | |
| extract_tiles(long nn, Vector3< long > tile_size, double fraction=0.2) | Bimage | |
| extract_wrap(long nn, Vector3< double > loc, Vector3< long > size, Vector3< double > origin, Matrix3 mat) | Bimage | |
| extract_wrap(long nn, Vector3< long > size, Matrix3 mat) | Bimage | inline |
| extrude_cross_section(long length, double helix_rise, double helix_angle, int fill_type, double fill) | Bimage | |
| fft(fft_direction dir, int norm_flag, ComplexConversion conv) | Bimage | |
| fft(fft_direction dir, int norm_flag) | Bimage | |
| fft(fft_plan plan, int norm_flag=1) | Bimage | |
| fft() | Bimage | inline |
| fft(fft_direction dir, Vector3< long > tile_size, int norm_flag=1) | Bimage | |
| fft_back() | Bimage | inline |
| fft_back(fft_plan plan, int norm_flag=1) | Bimage | inline |
| fft_setup(fft_direction dir, int opt=0) | Bimage | |
| fftz(fft_direction dir, int norm_flag=1) | Bimage | |
| fftz() | Bimage | inline |
| filament_density(double width) | Bimage | |
| filament_from_projections(double hi_res, int flag=0) | Bimage | |
| filament_width(long width, long lim_lo, long lim_hi) | Bimage | |
| file_name(string s) | Bimage | inline |
| file_name() | Bimage | inline |
| fill(double v) | Bimage | inline |
| fill_gaps(long step) | Bimage | |
| fill_value(double v) | Bimage | |
| filter_average(long kernel_size) | Bimage | |
| filter_average(Vector3< long > k) | Bimage | |
| filter_bilateral(double sigma1, double sigma2, int kernel_type, long kernel_radius) | Bimage | |
| filter_bilateral_chunk(Bimage *pkernel, double sigma2, int kernel_type, float *nudata, long i, long len, int first) | Bimage | |
| filter_by_difference(Bimage *p) | Bimage | |
| filter_dog(double sigma1, double sigma2) | Bimage | |
| filter_extremes() | Bimage | |
| filter_extremes(int mod_flag) | Bimage | |
| filter_extremes(double tmin, double tmax, int kernel=3) | Bimage | |
| filter_gaussian(long kernel_size, double sigma=0) | Bimage | |
| filter_ortho(int type) | Bimage | |
| filter_peak(long kernel_size) | Bimage | |
| filter_rank(long kernel_size, double rank) | Bimage | |
| filter_rank_chunk(long kernel_size, double rank, float *nudata, long i, long len) | Bimage | |
| filter_rolling_ball(long radius, double scale) | Bimage | |
| filter_sinc() | Bimage | |
| find(Bstring fn) | Bimage | inline |
| find_center(Bimage *pmask, double hires, double lores, double radius, double sigma, int refine_flag) | Bimage | |
| find_cyclic_point_group(Bsymmetry &sym, int binfac, double hires, double lores) | Bimage | |
| find_helix_parameters(double angle_start, double angle_end, double angle_step, int bin, double hires, double lores, double radius) | Bimage | |
| find_helix_parameters(double rise_start, double rise_end, double rise_step, double angle_start, double angle_end, double angle_step, int bin, double radius) | Bimage | |
| find_peak(double radius=1e30, double sigma=0) | Bimage | |
| find_peaks(long kernelsize) | Bimage | |
| find_peaks(double excl_dist, long &ncoor, double &threshold_min, double &threshold_max, double pix_min=2, double pix_max=10) | Bimage | |
| find_point_group(Bsymmetry &sym, double angle_step, int binfac, double hires, double lores, int flags) | Bimage | |
| find_shift(Bimage *pref, Bimage *pmask, double hires, double lores, double radius, double sigma, int refine_flag) | Bimage | |
| find_shift(Bimage *pref, Bimage *pmask, double hires, double lores, double radius, double sigma, int refine_flag, double &cc) | Bimage | |
| find_shift(Bimage *pref, double hires, double lores, double radius, double sigma, int refine_flag, fft_plan planf, fft_plan planb) | Bimage | |
| find_shift(Bimage *pref, Bimage *pmask, double hires, double lores, double radius, double sigma, int refine_flag, fft_plan planf, fft_plan planb, double &cc) | Bimage | |
| find_shift(long nn, Bimage *pref, Bimage *pmask, double hi_res, double lo_res, double shift_limit, fft_plan planf, fft_plan planb) | Bimage | |
| find_shift_in_transform(double shift_limit) | Bimage | |
| find_shift_in_transform(long nn, Bimage *pref, double shift_limit) | Bimage | |
| find_symmetric_view(Bimage *ptemp, Bsymmetry &sym, double phi_step, double theta_step, double alpha_step, Vector3< double > shift) | Bimage | |
| find_template(Bimage *ptemp, Bimage *pmask, double hires, double lores, int bin, fft_plan planf, fft_plan planb) | Bimage | |
| fit_peak() | Bimage | |
| fix_power_spectrum(int dir, double ratio) | Bimage | |
| fix_type() | Bimage | |
| fourier_type() | Bimage | inline |
| fourier_type(FourierType tf) | Bimage | inline |
| friedel_apply() | Bimage | |
| friedel_check() | Bimage | |
| friedel_difference() | Bimage | |
| fsc(double hi_res, double sampling_ratio, vector< double > &fsccut) | Bimage | |
| fsc(Bimage *p, double hi_res, double sampling_ratio=1) | Bimage | |
| fsc_dpr(double hi_res, double sampling_ratio=1, int flag=0) | Bimage | |
| fsc_local(Bimage *p, Bimage *pmask, double resolution, double *cutoff, int mask_level, int size, int pad, Vector3< long > vedge, int step=1, int taper=1, double fill=0) | Bimage | |
| fsc_shell(Bimage *p, double hi_res, double *cutoff, int thickness, int step, int minrad, int maxrad, int pad=1, int smooth=0, double fill=0) | Bimage | |
| fspace_2D_interpolate(Complex< float > cv, Vector3< double > m, double part_weight, int interp_type) | Bimage | |
| fspace_amp_one() | Bimage | |
| fspace_amp_threshold(double threshold) | Bimage | |
| fspace_background() | Bimage | |
| fspace_bandpass(double res_hi, double res_lo=0, double width=0) | Bimage | |
| fspace_bandpass(double res_hi, double res_lo, double width, fft_plan planf, fft_plan planb) | Bimage | |
| fspace_butterworth_band(double res_hi, double res_lo, int order=16) | Bimage | |
| fspace_default_bands(double res_lo, double res_hi) | Bimage | |
| fspace_fit_B_factor(double res_hi=0) | Bimage | |
| fspace_frequency_filter(double freq, double sigma) | Bimage | |
| fspace_frequency_filter(double freq, double sigma, fft_plan planf, fft_plan planb) | Bimage | |
| fspace_gabor_filter(Vector3< double > freq, double fsigma, double psigma) | Bimage | |
| fspace_gabor_filter(Vector3< double > freq, double fsigma, double psigma, fft_plan planf, fft_plan planb) | Bimage | |
| fspace_gradient(Vector3< double > sigma) | Bimage | |
| fspace_interpolate(long img_num, Vector3< double > m, FSI_Kernel *kernel) | Bimage | |
| fspace_maximum_radius(double resolution, double sampling_ratio=1) | Bimage | |
| fspace_normalize() | Bimage | |
| fspace_normalize_radial(Bimage *pmask, double resolution=0, int flag=0) | Bimage | |
| fspace_pack_2D(Bimage *p, Matrix3 mat, double hi_res, double lo_res, Vector3< double > scale, double ewald_wavelength=0, double part_weight=1, int interp_type=0) | Bimage | |
| fspace_pack_2D(Bimage *p, View asu_view, Bsymmetry &sym, double hi_res, double lo_res, Vector3< double > scale, double ewald_wavelength=0, double part_weight=1, int interp_type=0) | Bimage | |
| fspace_pack_2D_into_central_section(Bimage *p, long ft_size, double scale, double hi_res, double lo_res, Matrix3 matr, Matrix3 mat) | Bimage | |
| fspace_pack_3D(Bimage *p, double hi_res=0, double threshold=0) | Bimage | |
| fspace_positive() | Bimage | |
| fspace_radial(long nn, long maxrad, int flag=0) | Bimage | |
| fspace_radial_power(double resolution, double sampling_ratio=1) | Bimage | |
| fspace_reconstruction_add(Bimage *p) | Bimage | |
| fspace_reconstruction_snr() | Bimage | |
| fspace_reconstruction_stats(double resolution, double sampling_ratio=1) | Bimage | |
| fspace_reconstruction_weigh() | Bimage | |
| fspace_resize(double scale, double res_hi, double res_lo) | Bimage | |
| fspace_resize(Bimage *pref) | Bimage | |
| fspace_scale(vector< double > &scale, Bimage *pmask=NULL) | Bimage | |
| fspace_scale(long nn, vector< double > &scale, Bimage *pmask=NULL) | Bimage | |
| fspace_shift_sum() | Bimage | inline |
| fspace_sqrt_amp() | Bimage | |
| fspace_square_amp() | Bimage | |
| fspace_ssnr(long nimg, double res_hi, double sampling_ratio) | Bimage | |
| fspace_subset_ssnr(int subset, double res_hi, double sampling_ratio, int flag=0) | Bimage | |
| fspace_subset_sums(int subset, int flag=0) | Bimage | |
| fspace_sum(int shift=0) | Bimage | |
| fspace_translate(Vector3< double > shift) | Bimage | |
| fspace_translate(long nn, Vector3< double > shift) | Bimage | |
| fspace_weigh(vector< double > &curve, int flag=0) | Bimage | |
| fspace_weigh(Bimage *pref, Bimage *pmask, double resolution=0) | Bimage | |
| fspace_weigh_accumulated_dose(vector< double > dose) | Bimage | |
| fspace_weigh_B_factor(double B, double resolution=0) | Bimage | |
| fspace_weigh_C_curve(double resolution=0) | Bimage | |
| fspace_weigh_dose(long nn, double dose_per_frame, vector< double > critdose) | Bimage | |
| fspace_weigh_dose(double dose_per_frame, int flag=0) | Bimage | |
| fspace_weigh_FSC_curve(Bplot *plot, double resolution=0) | Bimage | |
| fspace_weigh_gaussian(long nn, Vector3< double > sigma, int dir=0) | Bimage | |
| fspace_weigh_LoG(double resolution, double sigma) | Bimage | |
| fspace_weigh_ramp(double resolution, fft_plan planf, fft_plan planb) | Bimage | |
| fspace_weigh_ramp(double resolution, double axis, fft_plan planf, fft_plan planb) | Bimage | |
| fspace_weigh_RPS_curve(Bplot *plot, double resolution=0) | Bimage | |
| gaussian_sphere(long nn, Vector3< double > center, double sigma, double amp, bool wrap=0) | Bimage | |
| get(long nn, long xx, long yy, long zz, long cc=0) | Bimage | |
| get(long nn, Vector3< double > vox, long cc=0) | Bimage | |
| get(Bstring tag) | Bimage | |
| get_localtime() | Bimage | inline |
| get_time() | Bimage | inline |
| gradient() | Bimage | |
| gradient3x3() | Bimage | |
| gradient_correction() | Bimage | |
| graph_segment(int type=1, int connect_type=0, double complexity=0, long min_size=0) | Bimage | |
| graph_segments_to_image(GSgraph &g) | Bimage | |
| graph_segments_to_mask(GSgraph &g) | Bimage | |
| graph_setup(int connect_type) | Bimage | |
| guess_compoundtype(long nc) | Bimage | |
| hanning_taper(double fill=0) | Bimage | |
| height(View *views, double threshold=0) | Bimage | |
| helical_cross_section(double helix_rise, double helix_angle, double scale, double hires) | Bimage | |
| helix_interpolate(long i, double helix_rise, double helix_angle, int zmin, int zmax, double radius, int norm_flag=1) | Bimage | |
| helix_segment_correlation(int thickness, double angle_start, double angle_end, double angle_step, int bin, double hires, double lores, double radius) | Bimage | |
| helix_segment_correlation_one(long i, double angle_start, double angle_end, double angle_step, int bin, double hires, double lores, double radius, fft_plan planf, fft_plan planb, double *cc) | Bimage | |
| helix_symmetrize(double helix_rise, double helix_angle, int dyad_axis, int zmin, int zmax, double radius, int norm_flag=1) | Bimage | |
| histogram(long bins, double &scale, double &offset) | Bimage | |
| histogram(long bins) | Bimage | |
| histogram_counts(int flags=0) | Bimage | |
| histogram_gauss_fit(long bins, long ngauss=1) | Bimage | |
| histogram_gauss_fit2(long bins, long ngauss=1) | Bimage | |
| histogram_gauss_plot(long bins, long ngauss=1) | Bimage | |
| histogram_minmax(double &tmin, double &tmax) | Bimage | |
| histogram_multi_thresholds(long bins, long number) | Bimage | |
| histogram_otsu_variance(long bins) | Bimage | |
| histogram_poisson_fit(long bins, int flag=0) | Bimage | |
| histomatch(Bimage *p, long bins) | Bimage | |
| identifier(Bstring s) | Bimage | inline |
| identifier() | Bimage | inline |
| image | Bimage | |
| image_size() | Bimage | inline |
| images() | Bimage | inline |
| images(long nn) | Bimage | |
| images_to_channels(long nc, CompoundType ct) | Bimage | |
| images_to_slices() | Bimage | |
| impose_superpixels(Bimage *pmask, vector< Bsuperpixel > &seg, int impose) | Bimage | |
| index(long nx, long ny) const | Bimage | inline |
| index(long nx, long ny, long nz) const | Bimage | inline |
| index(long nx, long ny, long nz, long nn) const | Bimage | inline |
| index(long nc, long nx, long ny, long nz, long nn) const | Bimage | inline |
| index(Vector3< long > vox, long nn) const | Bimage | inline |
| index(vector< long > vox, long nn) const | Bimage | inline |
| index_wrap(long nx, long ny, long nz) const | Bimage | inline |
| index_wrap(Vector3< long > coor) const | Bimage | inline |
| index_wrap(vector< long > coor) const | Bimage | inline |
| information() | Bimage | |
| integer_interpolation(int integer_factor) | Bimage | |
| integer_interpolation(int integer_factor, int odd) | Bimage | |
| intensities_phase_colored(double scale) | Bimage | |
| internal_volume(double threshold) | Bimage | |
| internal_volume(double threshold, int mask_out_freq) | Bimage | |
| interpolate(long cc, double xx, double yy=0, double zz=0, long nn=0, double fill=0) const | Bimage | |
| interpolate(long cc, Vector3< double > vec, long nn=0, double fill=0) const | Bimage | inline |
| interpolate(Vector3< double > vec, long nn=0, double fill=0) const | Bimage | inline |
| interpolate(vector< double > vec, long nn=0, double fill=0) const | Bimage | inline |
| interpolate_gaps(long step) | Bimage | |
| interpolate_wrap(long cc, double xx, double yy=0, double zz=0, long nn=0) const | Bimage | |
| interpolate_wrap(double xx, double yy=0, double zz=0, long nn=0) const | Bimage | inline |
| interpolate_wrap(long cc, Vector3< double > vec, long nn=0) const | Bimage | inline |
| interpolate_wrap(Vector3< double > vec, long nn=0) const | Bimage | inline |
| inverse(double minval=0) | Bimage | |
| invert() | Bimage | |
| kernel_average(long idx, long ksize, double tmin, double tmax) | Bimage | |
| kernel_gaussian(double sigma, double max) | Bimage | |
| kernel_high(long i, long k=1) | Bimage | inline |
| kernel_high(long i, Vector3< long > k) | Bimage | inline |
| kernel_laplacian_of_gaussian(double sigma, double max) | Bimage | |
| kernel_low(long i, long k=1) | Bimage | inline |
| kernel_low(long i, Vector3< long > k) | Bimage | inline |
| kernel_max(long idx, long ksize) | Bimage | |
| kernel_max_neigbor(long idx, long ksize) | Bimage | |
| kernel_max_wrap(long idx, long ksize) | Bimage | |
| kernel_min(long idx, long ksize) | Bimage | |
| kernel_neighbor_average(long idx, long ksize) | Bimage | |
| kernel_order(long idx, long ksize) | Bimage | |
| kernel_order_neighbors(long idx, long ksize) | Bimage | |
| kernel_sum(long idx, long ksize) | Bimage | |
| kmeans_segment(long nregion=2, long max_iter=10, double ratio=1) | Bimage | |
| label(string s) | Bimage | inline |
| label() | Bimage | inline |
| largest(Bimage *p) | Bimage | |
| level_mask_extract(Bimage *pmask, int fill_type=0, double fill=0) | Bimage | |
| level_masked_stats(Bimage *pmask) | Bimage | |
| levelmask_add(Bimage *pmask, int add_level=1) | Bimage | |
| levelmask_asymmetric_units(Bsymmetry &sym, int index) | Bimage | |
| levelmask_average_region_size() | Bimage | |
| levelmask_clean() | Bimage | |
| levelmask_collapse() | Bimage | |
| levelmask_color_by_size() | Bimage | |
| levelmask_colorize() | Bimage | |
| levelmask_combine(Bstring &select_list) | Bimage | |
| levelmask_dilate(int times) | Bimage | |
| levelmask_dilate() | Bimage | |
| levelmask_region_size() | Bimage | |
| levelmask_select(Bstring &select_list, int flag=0) | Bimage | |
| levelmask_select(long nn, Vector3< long > voxel) | Bimage | |
| levelmask_select(Bimage *pmask) | Bimage | |
| levelmask_size_histogram() | Bimage | |
| levelmask_switch(long index1, long index2) | Bimage | |
| levelmask_symmetrize(Bsymmetry &sym) | Bimage | |
| limit_levels(int nlevels) | Bimage | |
| line(Vector3< double > start, Vector3< double > end, double width, int fill_type=0, double fill=0) | Bimage | |
| line_powerspectra(fft_plan plan) | Bimage | |
| linear_fit(Bimage *p, Bimage *pmask, double max_exclude) | Bimage | |
| local_filter(Bimage *pmask, int mask_level, Bimage *resmap, int size, Vector3< long > vedge) | Bimage | |
| logarithm() | Bimage | |
| mask(Bimage *pmask, double fill) | Bimage | |
| mask_by_conditional_thresholds(vector< double > threshold) | Bimage | |
| mask_by_threshold(double threshold) | Bimage | |
| mask_by_thresholds(vector< double > threshold) | Bimage | |
| mask_close(int times=1) | Bimage | |
| mask_combine(Bimage *p, int operation) | Bimage | |
| mask_dilate(long times=1) | Bimage | |
| mask_dilate_erode(unsigned char dir) | Bimage | |
| mask_erode(long times=1) | Bimage | |
| mask_extract(Bimage *pmask) | Bimage | |
| mask_fill(Vector3< long > voxel) | Bimage | |
| mask_fspace_banded(vector< double > &band) | Bimage | |
| mask_fspace_resize(Vector3< long > nusize) | Bimage | |
| mask_interface_matrix(int img_num) | Bimage | |
| mask_invert() | Bimage | |
| mask_merge_delete(long min_size, long min_if) | Bimage | |
| mask_missing_cone(Vector3< double > origin, double mis_ang, double resolution) | Bimage | |
| mask_missing_find(Vector3< double > ori, double resolution, Bstring &mis_type) | Bimage | |
| mask_missing_pyramid(Vector3< double > origin, double tilt_axis1, double tilt_axis2, double tilt_neg1, double tilt_pos1, double tilt_neg2, double tilt_pos2, double resolution) | Bimage | |
| mask_missing_wedge(Vector3< double > origin, double tilt_axis, double tilt_neg, double tilt_pos, double resolution) | Bimage | |
| mask_open(int times=1) | Bimage | |
| mask_pack_plane(Matrix3 mat, double hi_res, double scale) | Bimage | |
| mask_plane(Vector3< double > origin, Vector3< double > normal) | Bimage | |
| mask_rectangle(double length, double width, double rect_angle, int wrap) | Bimage | |
| mask_region_interfaces(int reg_num) | Bimage | |
| mask_shell(Vector3< double > origin, double rad_min, double rad_max) | Bimage | inline |
| mask_shell_wrap(Vector3< double > origin, double rad_min, double rad_max) | Bimage | inline |
| mask_split(long voxels_per_level) | Bimage | |
| mask_stats() | Bimage | |
| mask_symmetrize(Bsymmetry &sym) | Bimage | |
| mass_at_threshold(long img_num, double threshold, double rho) | Bimage | |
| mass_threshold(long img_num, double mol_weight, double rho) | Bimage | |
| max_in_kernel(long ksize) | Bimage | |
| maximum() | Bimage | inline |
| maximum(double d) | Bimage | inline |
| maximum_included_radius() | Bimage | |
| median_bin(int binning) | Bimage | |
| merge_amplitudes_and_phases(Bimage *pamp) | Bimage | |
| merge_amplitudes_and_phases(Bimage *pref, double res_hi, double res_lo) | Bimage | |
| meta_data() | Bimage | inline |
| meta_data_retain_one_image(long img_num) | Bimage | |
| meta_data_update() | Bimage | |
| minimum() | Bimage | inline |
| minimum(double d) | Bimage | inline |
| mirror() | Bimage | |
| moments(long max_order) | Bimage | |
| moments(long max_order, long nn) | Bimage | |
| montage(int first, int cols, int rows, int skip=0, int flipy=0) | Bimage | |
| moving_sum(long window, long step=1, int flag=0) | Bimage | |
| multi_channel_to_complex() | Bimage | |
| multiply(long j, Complex< double > cv) | Bimage | inline |
| multiply(double v) | Bimage | |
| multiply(long nn, double v) | Bimage | |
| multiply(Bimage *p, double scale, double shift=0) | Bimage | |
| multiply(long nn, Bimage *p) | Bimage | |
| multiply(Bimage *p) | Bimage | |
| nad(double ht, long zw, double lambda, double C, double alpha) | Bimage | |
| nad_2D(double ht, double lambda, double C, double alpha) | Bimage | |
| next | Bimage | |
| noise_gaussian(double ravg=0, double rstd=1) | Bimage | |
| noise_gaussian_distance(long number, double stdev) | Bimage | |
| noise_logistical(double ravg, double rstd) | Bimage | |
| noise_poisson(double ravg) | Bimage | |
| noise_spectral(double alpha) | Bimage | |
| noise_uniform(double rmin, double rmax) | Bimage | |
| noise_uniform_distance(long number) | Bimage | |
| normalize(long imgnum, double average, double stdev, int norm_type, long bins) | Bimage | |
| normalize(double average, double stdev, int norm_type) | Bimage | |
| normalize_local(long kernel_size) | Bimage | |
| normalize_local(Vector3< long > kernel) | Bimage | |
| one_color(int color, double cmin, double cmax, int flag=0) | Bimage | |
| operator+(Bimage &p) | Bimage | |
| operator=(const Bimage &p) | Bimage | |
| operator[](string tag) | Bimage | inline |
| operator[](long j) const | Bimage | |
| opposite_ewald() | Bimage | |
| orient(View *views) | Bimage | |
| origin(double ox, double oy, double oz) | Bimage | inline |
| origin(vector< double > vec) | Bimage | inline |
| origin(Vector3< double > vec) | Bimage | inline |
| origin(long nn, Vector3< double > vec) | Bimage | inline |
| origin(long nn, vector< double > ori) | Bimage | inline |
| origin(long nn, double ox, double oy, double oz) | Bimage | inline |
| orthogonal_montage(Vector3< long > voxel, Vector3< long > ext_size, int pad=0, int fill_type=0, double fill=0) | Bimage | |
| orthogonal_slices(long nn, Vector3< long > voxel, Vector3< long > ext_size) | Bimage | |
| otsu_threshold(long bins) | Bimage | |
| otsu_variance(vector< long > h) | Bimage | |
| pack_transform(unsigned char *data, FourierType tf) | Bimage | |
| pack_transform(int img_select, unsigned char *data, FourierType tf) | Bimage | |
| pack_two_in_complex(Bimage *p) | Bimage | |
| pad(long sz, int fill_type=0, double fill=0) | Bimage | |
| pad(Vector3< long > sz, int fill_type=0, double fill=0) | Bimage | |
| pad_copy(long sz, int fill_type=0, double fill=0) | Bimage | |
| pad_copy(Vector3< long > sz, int fill_type=0, double fill=0) | Bimage | |
| page_size() | Bimage | inline |
| page_size(long nx, long ny, long nz) | Bimage | inline |
| page_size(Vector3< long > vec) | Bimage | inline |
| page_size(vector< long > vec) | Bimage | inline |
| peak_sigma(long nn, Vector3< long > coor, long kernel_size) | Bimage | |
| percentiles() | Bimage | |
| periodic_averaging(Vector3< double > period) | Bimage | |
| phase_add(double v) | Bimage | |
| phase_colour_wheel() | Bimage | |
| phase_correlate(Bimage *p, double hires, double lores, Bimage *pmask=NULL) | Bimage | |
| phase_difference(Bimage *p, int type=0, double res_hi=0, double res_lo=0) | Bimage | |
| phase_flip(Bimage *pd) | Bimage | |
| phase_shift(Vector3< double > shift) | Bimage | |
| phase_shift(long nn, Vector3< double > shift) | Bimage | |
| phase_shift_to_center() | Bimage | |
| phase_shift_to_origin() | Bimage | |
| phase_to_complex() | Bimage | |
| place(long nn, Bimage *p, Vector3< double > loc, double radius=0, double scale=1, double shift=0, int operation=0) | Bimage | |
| place_central_part(Bimage *p, long nn) | Bimage | |
| place_with_addition(Bimage *p, long nn) | Bimage | |
| place_with_overlap(Bimage *p, long nn) | Bimage | |
| plot() | Bimage | |
| poisson_statistics_check() | Bimage | |
| polar_power_spectrum(double resolution, long num_angle) | Bimage | |
| polar_transform(long nangles, long ann_min, long ann_max, long dann, long zmin, long zmax, long zinc) | Bimage | |
| power(double v) | Bimage | |
| power_spectrum(int flags=0) | Bimage | |
| powerspectrum_isotropy(long n, double &lores, double &hires) | Bimage | |
| powerspectrum_tiled(long img_num, Vector3< long > tile_size, int flags=0) | Bimage | |
| powerspectrum_tiled_and_tilted(Vector3< long > tile_size, double tilt_axis, double tilt_angle, double tilt_offset, double defocus, double iCL2, int flags=0) | Bimage | |
| powerspectrum_tiled_exact(long img_num, Vector3< long > tile_size, int flags=0) | Bimage | |
| powerspectrum_tilt_axis(long img_num, Vector3< long > tile_size, double tilt_axis, double tilt_offset, int flags=0) | Bimage | |
| powerspectrum_tilted(long img_num, Vector3< long > tile_size, double tilt_axis, double tilt_angle, double defocus, double iCL2, int flags=0) | Bimage | |
| pps_angular_correlation(Bimage *pref, double res_hi, double res_lo, long nang, fft_plan planf) | Bimage | |
| progressive_sum() | Bimage | |
| project(char axis, int flags=1) | Bimage | |
| project(View *view, int norm_flag=1) | Bimage | |
| project(View *view, double resolution, FSI_Kernel *kernel, double wavelength=0, bool back=1, ComplexConversion conv=NoConversion) | Bimage | |
| pure_color() | Bimage | |
| quadric(double *param) | Bimage | |
| quadric_correct(vector< double > param) | Bimage | |
| quadric_fit() | Bimage | |
| query(string &path) | Bimage | inline |
| R_factor(Bimage *p) | Bimage | |
| radial(long minrad, long maxrad, double rad_step=1, int wrap=0) | Bimage | |
| radial(long minrad, long maxrad, double rad_step, Bimage *pmask, int wrap=0) | Bimage | |
| radial(long minrad, long maxrad, double rad_step, double ellipticity, double angle, Bimage *pmask, int wrap=0) | Bimage | |
| radial_coverage(double threshold, double rad_step=1) | Bimage | |
| radial_fit(Bimage *pref) | Bimage | |
| radial_sections(double rad_start, double rad_end, double rad_step, double spherical_fraction, Bsymmetry &sym, int fill_type=FILL_USER, double fill=0) | Bimage | |
| radial_shells() | Bimage | |
| radial_symmetry_adjusted(double rad_start, double rad_end, double rad_step, double spherical_fraction, Bsymmetry &sym) | Bimage | |
| radial_to_full(Vector3< long > nusize, Vector3< double > origin) | Bimage | |
| read_data(ifstream *fimg, int img_select, int sb, int vax, long pad) | Bimage | |
| real_coordinates(long i) | Bimage | inline |
| real_size() | Bimage | inline |
| reciprocal_half() | Bimage | inline |
| red_white_blue(double red_min, double white_min, double white_max, double blue_max) | Bimage | |
| refine_peak() | Bimage | |
| refine_peak(long kernel_size) | Bimage | |
| refine_peak_new() | Bimage | |
| region_assign(Bimage *pmask, long idx, long region_number, double threshold, int sign) | Bimage | |
| region_flood(Bimage *pmask, double threshold_hi, double threshold_lo, double threshold_step, int fill_borders) | Bimage | |
| region_peaks(long kernel_size, double threshold, int flood=0, int wrap=0) | Bimage | |
| region_threshold_series(double threshold_first, double threshold_last, double threshold_step) | Bimage | |
| regions(double threshold, int sign) | Bimage | |
| relative_density(Bimage *pmask) | Bimage | |
| replace(Bimage *img) | Bimage | |
| replace(long nn, Bimage *img, long nr=0) | Bimage | |
| replace(long nn, Bimage *img, long nr, double fill) | Bimage | |
| replace_half(Bimage *p) | Bimage | |
| replace_maxima(double threshold) | Bimage | |
| replicate_asymmetric_unit(Bsymmetry &sym) | Bimage | |
| rescale(double scale, double shift) | Bimage | |
| rescale(long nn, double scale, double shift) | Bimage | |
| rescale_to_avg_std(double nuavg, double nustd) | Bimage | |
| rescale_to_avg_std(long nn, double nuavg, double nustd) | Bimage | |
| rescale_to_avg_std(double nuavg, double nustd, Bimage *pmask) | Bimage | |
| rescale_to_min_max(double numin, double numax) | Bimage | |
| rescale_to_min_max(long nn, double numin, double numax) | Bimage | |
| resize(Vector3< long > nusize, Vector3< long > translate, int fill_type=0, double fill=0) | Bimage | |
| resize_copy(Vector3< long > nusize, Vector3< long > translate, int fill_type=0, double fill=0) | Bimage | |
| resize_wrap(Vector3< long > nusize, Vector3< long > translate) | Bimage | |
| resize_wrap_copy(Vector3< long > nusize, Vector3< long > translate) | Bimage | |
| reslice(const char *order) | Bimage | inline |
| reslice(Bstring order) | Bimage | |
| resolution_prepare(Bimage *p) | Bimage | |
| resolution_prepare(Bimage *p, fft_plan plan) | Bimage | |
| rgb(long j) | Bimage | |
| rgb_to_cmyk() | Bimage | |
| rgb_to_rgba() | Bimage | |
| rgba(long j) | Bimage | |
| rgba_to_rgb() | Bimage | |
| rotate() | Bimage | |
| rotate(double angle) | Bimage | |
| rotate(Vector3< double > axis, double angle) | Bimage | |
| rotate(View view) | Bimage | |
| rotate(Vector3< double > translate, View view) | Bimage | |
| rotate(Matrix3 mat) | Bimage | |
| rotate(Vector3< double > translate, Matrix3 mat) | Bimage | |
| rotate(Vector3< long > nusize) | Bimage | |
| rotate(Vector3< long > nusize, double angle) | Bimage | |
| rotate(Vector3< long > nusize, Vector3< double > axis, double angle) | Bimage | |
| rotate(Vector3< long > nusize, View view) | Bimage | |
| rotate(Vector3< long > nusize, Vector3< double > translate, View view) | Bimage | |
| rotate(Vector3< long > nusize, Matrix3 mat) | Bimage | |
| rotate_and_add(Bimage *p, Vector3< double > origin, View view) | Bimage | |
| rotate_correlate(Vector3< double > axis, double angle) | Bimage | |
| rotate_cross_correlate(Bimage *pref, View view, double hires, double lores, double search_radius, Bimage *pmask, double &cc, fft_plan planf, fft_plan planb) | Bimage | |
| rotate_cross_correlate_two_way(Bimage *pref, double angle, double res_hi, double res_lo, double shift_limit, fft_plan planf, fft_plan planb) | Bimage | |
| rotate_find_shift(Matrix3 mat, double hires, double lores, double radius, double sigma, int refine_flag, fft_plan planf, fft_plan planb, double &cc) | Bimage | |
| rotate_height(Matrix3 mat, Vector3< double > translate, double threshold=0) | Bimage | |
| rotate_project(Matrix3 mat, Vector3< double > translate, double radial_cutoff, int norm_flag=1) | Bimage | |
| rotate_to_axis(Bsymmetry &sym, long axis, long axis_flag) | Bimage | |
| sampling(long nn, Vector3< double > u) | Bimage | inline |
| sampling(long nn, double ux, double uy, double uz) | Bimage | inline |
| sampling(Vector3< double > u) | Bimage | inline |
| sampling(double ux, double uy, double uz) | Bimage | inline |
| sampling(long nn) | Bimage | inline |
| sampling() | Bimage | inline |
| sampling(vector< Vector3< double > > sam) | Bimage | inline |
| scale_to_reference(Bimage *pref, Bimage *pmask, double scalemin, double scalemax, double step) | Bimage | |
| scale_to_reference(Bimage *pref, Bimage *pmask=NULL) | Bimage | |
| scale_to_same_size(Bimage *pref) | Bimage | |
| seamed_helix_symmetrize(double helix_rise, double helix_angle, double seam_shift, int dyad_axis, int zmin, int zmax, double radius, int norm_flag) | Bimage | |
| search_views(Bimage *ptemp, View *view, double hires, double lores, double search_radius, Bimage *pmask, View &currview, Vector3< double > &currshift) | Bimage | |
| search_volume(Bimage *ptemp, View *view, double alpha, double alpha_step, double hires, double lores, Bimage *pmask, double threshold) | Bimage | |
| search_volume_view(Bimage *ptemp, View view, double hires, double lores, Bimage *pmask, double threshold, Bimage *pfit) | Bimage | |
| select_images(Bstring list) | Bimage | |
| set(long j, double v) | Bimage | |
| set(long j, Complex< double > cv) | Bimage | |
| set(long j, RGB< double > color) | Bimage | |
| set(long j, RGBA< double > color) | Bimage | |
| set(long j, CMYK< double > color) | Bimage | |
| set(long j, Vector3< double > vec) | Bimage | |
| set(long j, View view) | Bimage | |
| set_hi_lo_resolution(double &hi, double &lo) | Bimage | |
| set_max(double xx, double yy, double zz, long nn, double v) | Bimage | |
| set_subset_selection(Bstring list) | Bimage | |
| set_time(time_t t) | Bimage | inline |
| set_time(tm *t) | Bimage | inline |
| shape(int type, Vector3< long > rect, Vector3< double > start, double width, int fill_type=0, double fill=0, bool wrap=0) | Bimage | |
| shape(long nn, int type, Vector3< long > rect, Vector3< double > start, double width, int fill_type=0, double fill=0, bool wrap=0) | Bimage | |
| shell(Vector3< double > center, double minrad, double maxrad, double width, int fill_type=0, double fill=0) | Bimage | |
| shell(long nn, Vector3< double > center, double minrad, double maxrad, double width, int fill_type=0, double fill=0) | Bimage | |
| shell_wrap(Vector3< double > center, double minrad, double maxrad, double width, int fill_type, double fill) | Bimage | |
| shell_wrap(long nn, Vector3< double > center, double minrad, double maxrad, double width, int fill_type=0, double fill=0) | Bimage | |
| shift(Vector3< double > vec, int fill_type=0, double fill=0) | Bimage | |
| shift(long nn, Vector3< double > vec, int fill_type=0, double fill=0) | Bimage | |
| shift_background(double bkg) | Bimage | |
| shift_wrap(Vector3< double > vec) | Bimage | |
| shift_wrap(long nn, Vector3< double > vec) | Bimage | |
| show_image() | Bimage | inline |
| show_image(long nn) | Bimage | inline |
| show_maximum() | Bimage | inline |
| show_maximum(double v) | Bimage | inline |
| show_minimum() | Bimage | inline |
| show_minimum(double v) | Bimage | inline |
| show_scale() | Bimage | inline |
| show_scale(double scale) | Bimage | inline |
| show_slice() | Bimage | inline |
| show_slice(long nz) | Bimage | inline |
| shrink_wrap(Vector3< long > nusize, Vector3< long > translate) | Bimage | |
| simple_to_complex() | Bimage | |
| simple_to_rgb() | Bimage | |
| simple_to_rgba() | Bimage | |
| sine() | Bimage | |
| size() const | Bimage | inline |
| size(long nx, long ny, long nz) | Bimage | inline |
| size(Vector3< long > vec) | Bimage | inline |
| size(vector< long > vec) | Bimage | inline |
| sizeX(long nx) | Bimage | inline |
| sizeX() const | Bimage | inline |
| sizeY(long ny) | Bimage | inline |
| sizeY() const | Bimage | inline |
| sizeZ(long nz) | Bimage | inline |
| sizeZ() const | Bimage | inline |
| slices_to_images() | Bimage | |
| smallest(Bimage *p) | Bimage | |
| snvariance(double snradius) | Bimage | |
| space_group() | Bimage | inline |
| space_group(unsigned int grp) | Bimage | inline |
| sphere(Vector3< double > center, double radius, double width=0, int fill_type=0, double fill=0, bool wrap=0) | Bimage | |
| split_channels() | Bimage | |
| split_channels_to_images() | Bimage | |
| square() | Bimage | |
| square_root() | Bimage | |
| standard_deviation() | Bimage | inline |
| standard_deviation(double d) | Bimage | inline |
| statistics() | Bimage | |
| statistics(long img_num) | Bimage | |
| statistics(Bimage *pmask, double ®avg, double ®std) | Bimage | |
| stats_in_mask(long nn, Bimage *pmask) | Bimage | |
| stats_in_poly(long nn, int nvert, Vector3< double > *poly) | Bimage | |
| stats_in_shape(long nn, int type, Vector3< long > start, Vector3< long > end) | Bimage | |
| stats_within_radii(long nn, Vector3< double > loc, double rad_min, double rad_max) | Bimage | |
| subimage_information() | Bimage | |
| subtract(Bimage *p) | Bimage | |
| subtract_background() | Bimage | |
| sum(long m, Bimage **p) | Bimage | |
| sum_images() | Bimage | |
| superpixels(long step, double colorweight=0.2, long iterations=10, double stop=1) | Bimage | |
| superpixels(long step, double colorweight=0.2, long iterations=10, long bin_levels=1, double stop=1) | Bimage | |
| superpixels_from_mask(long cc, long step) | Bimage | |
| superpixels_update(Bimage *pmask, vector< long > vstep, double colorweight, vector< Bsuperpixel > &seg) | Bimage | |
| surface_to_topograph(double threshold, int dir=0) | Bimage | |
| symmetrize(Bstring &symmetry_string, int flag) | Bimage | inline |
| symmetrize(Bsymmetry sym, int flag) | Bimage | inline |
| symmetrize(Bstring &symmetry_string, View ref_view, int flag) | Bimage | inline |
| symmetrize(Bsymmetry sym, View ref_view, int flag) | Bimage | |
| symmetrize_cyclic(int cyclic, int flag) | Bimage | inline |
| symmetrize_cylinder(int flag) | Bimage | |
| symmetrize_cylinder() | Bimage | |
| symmetry() | Bimage | inline |
| symmetry(string grp) | Bimage | inline |
| symmetry_equivalent(Bimage *ptemp, Bimage *pmask, Bsymmetry &sym) | Bimage | |
| symmetry_equivalent_cyclic(Bimage *pref, Bimage *pmask, Bsymmetry &sym) | Bimage | |
| tangent() | Bimage | |
| test_helix_parameters(double angle, double hires, double lores, Vector3< long > mask_size, Vector3< long > mask_start, long max_iter, fft_plan planf, fft_plan planb, double &cc) | Bimage | |
| test_helix_parameters(double rise, double angle, Vector3< long > mask_size, Vector3< long > mask_start) | Bimage | |
| thickness(double reference, double emfp) | Bimage | |
| tile_coordinates(Vector3< long > &start, Vector3< long > ®ion, Vector3< long > &tile_size, Vector3< long > &step_size, int exceed) | Bimage | |
| tile_coordinates(Vector3< long > tile_size, Vector3< long > &step_size) | Bimage | |
| tile_mask(long step) | Bimage | |
| to_mask() | Bimage | inline |
| to_mask(double threshold) | Bimage | |
| topograph_to_surface(Bimage *psd, long nz, double density, double resolution) | Bimage | |
| track_gradient(double threshold, int flag=0) | Bimage | |
| transform(Vector3< double > scale, Vector3< double > origin, Vector3< double > translate, Matrix3 mat, int fill_type=0, double fill=0) | Bimage | |
| transform(Vector3< long > nusize, Vector3< double > scale, Vector3< double > origin, Vector3< double > translate, Matrix3 mat, int fill_type=0, double fill=0) | Bimage | |
| transform(long nn, Vector3< long > nusize, Vector3< double > scale, Vector3< double > origin, Vector3< double > translate, Matrix3 mat, int fill_type=0, double fill=0) | Bimage | |
| transform_lines() | Bimage | |
| transform_voxel(long i, Bimage *pt, long nn, Vector3< double > oldorigin, Vector3< double > nuorigin, Matrix3 affmat, double fill) | Bimage | |
| truncate(double minim, double maxim, double setmin, double setmax) | Bimage | |
| truncate_to_avg(double minim, double maxim) | Bimage | |
| truncate_to_background(double minim, double maxim) | Bimage | |
| truncate_to_min_max(double minim, double maxim) | Bimage | |
| tube_interpolate(long i, int h, int k, double latconst, int zmin, int zmax, double radius, int norm_flag=1) | Bimage | |
| tube_symmetrize(int h, int k, double latconst, int zmin, int zmax, double radius, int norm_flag=1) | Bimage | |
| two_to_complex() | Bimage | |
| unit_cell(UnitCell uc) | Bimage | inline |
| unit_cell() | Bimage | inline |
| unit_cell_check() | Bimage | inline |
| unpack_combined_transform() | Bimage | |
| unpack_transform(unsigned char *data, FourierType tf) | Bimage | |
| unpack_transform(int img_select, unsigned char *data, FourierType tf) | Bimage | |
| update_from_meta_data() | Bimage | |
| values(long i) | Bimage | inline |
| values(long i, vector< double > val) | Bimage | inline |
| values(long nn, Vector3< double > vox) | Bimage | |
| variance() | Bimage | inline |
| variance(long kernel_size, int flag=0) | Bimage | |
| variance(Vector3< long > kernel_size, int flag=0) | Bimage | |
| variance(Bimage *pweight) | Bimage | |
| variance_mask(long kernel_size, double lowvar=1e-6, int bkg_flag=0) | Bimage | |
| variance_threshold(double lowvar) | Bimage | |
| vector3(long j) | Bimage | |
| vector_to_simple() | Bimage | |
| view(double vx, double vy, double vz, double va) | Bimage | inline |
| view(View vw) | Bimage | inline |
| voxel_size() | Bimage | inline |
| within_boundaries(Vector3< T > loc) | Bimage | inline |
| within_boundaries(long xx, long yy, long zz) | Bimage | inline |
| write(Bstring &fn) | Bimage | |
| zero_fourier_origin() | Bimage | |
| zero_origin() | Bimage | |
| ~Bimage() | Bimage |
1.9.3