| -rescale -0.1,5.2 | Rescale input images to average and standard deviation. |
| -extension zyx | Change the file extension after writing. |
| -verbose 3 | Verbosity of output. |
| -datatype u | Force writing of a new data type. |
| -sampling 1.5,1.5,1.5 | Sampling (A/pixel; a single value can be given). |
| -origin 0.8,-10,15.7 | Set the origin (default from input image). |
| -raw d=f#x=120,120,1 | Formatting to reinterpret image files. |
| -output mrc | Output format (default pif). |