Bsoft program

bcormut

Usage: bcormut [options] input.pir output.pir

Analyzes for correlated mutations in aligned protein sequences.
The -cutoff option must be used to do the correlated mutation analysis. All sequence numbers and position numbers start at 1. Sequence numbering is according to the input, including gaps.

Actions:

-cutoff 0.3	Correlated mutations: cutoff to report.
-limit	Limit output to reference sequence.

Parameters:

-verbose 7	Verbosity of output.
-datatype b	Set the output image data type.
-reference HUMAN	Reference sequence identifier (substring).

Input:

-properties file.star	Property file (default = internal values).

Output:

-matrix file.mat	Correlation coefficient matrix.
-image file.map	Correlation coefficient matrix as an image.

Examples:

	bcormut -verbose 7 -cutoff 0.4 -image coeff.map -datatype byte seq.pir

Bsoft version 2.0.7-20200917 (64 bit)

Generated by bdoc.pl on Mon Oct 26 08:20:10 2020

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