| -size 10,50,8 | New size (pixels). |
| -translate 0,-10,30 | Translation after rotating (default 0,0,0). |
| -rotate -2.5,5.5,9,45 | Rotate around a vector by an angle (default 0,0,0,0). |
| -toview 0.3,0.5,0.8,33 | Rotate to view: vector {xyz} and angle (default 0,0,1,0). |
| -fromview 0.3,0.5,0.8,33 | Rotate from view: vector {xyz} and angle (default 0,0,1,0). |
| -toeuler 16,120,85 | Euler angle rotation: Phi, theta, psi (around axes z, y, z). |
| -fromeuler 16,120,85 | Euler angle rotation: Psi, theta, phi (around axes z, y, z). |
| -scale 1.5,1.5,1.5 | Relative scale (changes the units). |
| -enlarge 2,3,1 | Enlarge the image by the given integer scale. |
| -integer 2,32 | Special integer interpolation by given kernel size (changes units). |
| If old origin falls on a voxel, new origin also falls on a voxel. |
| Second value forces odd/even dimensions (default all odd). |
| -bin 3,2,1 | Binning by given kernel size - one value = isotropic binning. |
| (i.e., 2 = binning with a 2x2 kernel, changes the units). |
| -median 3 | Median binning (changes the units). |
| -invert | Invert density in the image. |
| -slices | Interpret multiple 2D images as z-slices of a single 3D image |
| -images | Interpret slices of a single 3D image as 2D images |
| -rescale -0.1,5.2 | Rescale output data to average and standard deviation. |
| -project | Project a 3D image along the z-axis after transformation. |
| -Skew + | + skews and - removes skewing (default off). |
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