Bsoft program

bmapdist

Usage: bmapdist [options] input.star/input.img [input.star/input.img]

Calculates distance criterions between a set of 2D images or 3D maps.
CC: Correlation coefficient. R: R factor (Euclidean distance). FSC: Resolution based on Fourier shell correlation. DPR: Resolution based on differential phase residual. Clustering: The preference value should be set to the approximate average in the similarity matrix. The damping factor should be ~0.5, or between 0.1 and 0.9.

Actions:

-type fscOutput type of criterion: cc (default), r, fsc, dpr.
-preference -10Homogenous preference value for clustering.
-TwoDCompare 2D images rather than 3D maps.

Parameters:

-verbose 7Verbosity of output.
-resolution 15.3Resolution limit (angstrom).
-cutoff 0.5,45Resolution cutoffs for FSC and DPR.
-lambda 0.6Damping factor for clustering (default 0.5).

Input:

-mask mask.tifReal space mask (same size as input maps).

Output:

-output file.starOutput parameter file.
-matrix mat.datOutput comparison matrix file.

Bsoft version 2.0.7-20200917 (64 bit)

Generated by bdoc.pl on Mon Oct 26 08:20:11 2020

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