| -verbose 7 | Verbosity of output. |
| -sampling 1.5,1.5,1 | Sampling (A/pixel, one value sets all). |
| -mgselect 5 | Selected micrograph (default all, first micrograph = 1). |
| -recselect 5 | Selected reconstruction (default all, first reconstruction = 1). |
| -euler | Convert views to Euler angles. |
| -omega | Add or subtract 90 degrees to or from the OMEGA angle. |
| -magnification | Invert the magnification factor: 1/mag. |
| -path part | Path for new particles file (default current directory). |
| -extension pif | Set the particle image file format. |
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