| -removemarkers 14 | Mask out markers with this radius (pixels) before transformation. |
| -verbose 7 | Verbosity of output. |
| -datatype u | Force writing of a new data type. |
| -select 23,45,66 | Micrograph selection (default all). |
| -size 1024,1024,200 | Intended reconstruction size (default from micrograph). |
| -scale 0.5 | Scale of intended reconstruction (default 1). |
| -pad 3 | Image padding factor (default 2). |
| -fill 127 | Fill value for erasing/painting markers (default average). |
| -output file.star | Output STAR file name. |