| -ctf | Replace CTF parameters. |
| -particles | Replace particle parameters. |
| -origins | Replace particle origins. |
| -verbose 7 | Verbosity of output. |
| -master destination.star | Master parameter file into which to merge information from other input files. |
| -output output.star | Output parameter file (required any time "-split" is used to indicate the type). |
| -split 3 | Split micrograph or reconstruction data blocks into individual files: |
| Argument: 1-6: number of digits inserted before extension | |
| Argument: "id": micrograph ID's are used as file names (no -output required). | |
| Argument: "field": field ID's are used as file names (no -output required). | |
| -dump file.txt | Dump all the particle origins and views. |