| -translate 0,-50,22 | Translate (angstrom). |
| -rotate 0.5,0,5.8,45 | Rotate around a vector (x,y,z) by an angle. |
| -select CA | Atom selection (default all). |
| -apply C5 | Apply point group symmetry. |
| -find C5 | Find standard orientation for this point group symmetry. |
| -Bfactor D5 | Calculate B factors for this point group symmetry. |
| -pdbsymmetry | Read SMTRY matrices from a PDB file and apply them. |
| -pdbbiomt | Read BIOMT matrices from a PDB file and apply them. |
| -rename D | Rename molecules from the given letter. |
| -show | Show operational symmetry matrices. |
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