| -verbose 7 | Verbosity of output. |
| -sampling 1.5,1.5,1.5 | Sampling (A/pixel; default from input file; a single value can be given). |
| -origin 110,50,44 | Origin for rotations of the template (default taken from template image). |
| -angles 8.8,2.5,5.2 | Step size for alpha, theta and phi, one value sets all (default 45 degrees). |
| -resolution 15.6,200 | Resolution limits for cross-correlation (default 0). |
| -View 0.3,-0.5,0.8,33 | View to initiate search: vector {xyz} and angle (use with -symmetry option). |
| -symmetry D6 | Symmetry: Point group identifier (use with -View option). |
| -image 2 | Image number in a multi-image file (default 0=first image). |
| -bin 3 | Binning of input, template and mask by given kernel size, |
| output image remains same size as input. |
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