| -all | Reset selection to all components before other selections. |
| -cutoff 23.5 | Assign links within this cutoff distance. |
| -verbose 7 | Verbosity of output. |
| -componentradius 0.5 | Component display radius. |
| -linkradius 0.5 | Link display radius. |
| -parameters param.star | Input parameter file. |
| -output path.star | Output model file with components linked along paths. |