| -all | Reset selection to all particles before other selections. |
| -group 3022 | Select particles belonging to this group. |
| -setnumber 3 | Select given selection number and set others to zero. |
| -multiple 2 | Generate a number of maps from alternating particle images (default 1). |
| -size 50,50,70 | Specify a size to extract new particles from a map. |
| -resolution 15 | Specify a resolution to do a reciprocal space summation. |
| -std | Output standard deviation image rather than variance image. |
| -symmetry C5 | Apply point group symmetry after reconstruction. |
| -rescale -0.1,5.2 | Rescale output images to average and standard deviation. |
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