| -invert | Invert density in the image before other operations. |
| -rescale -0.1,5.2 | Rescale extracted regions to average and standard deviation. |
| -blobs 0.45,14,201,1.4 | Show blobs above threshold (0.45) and set outside minimum (14) |
| and maximum (201) sizes to value (1.4). |
| |
| Mask generating actions: |
| -mass 342k | Find threshold associated with this molecular weight (Da) |
| value can be given in Da, kDa (with k), MDa (with m) or Gda (with g). |
| Output binary mask (data type byte, values 0 and 1). |
| -threshold 1.54 | Report mass calculated from the volume included at this threshold. |
| Output binary mask (data type byte, values 0 and 1). |
| -multiple 1.2 | Generate multiple regions above this threshold. |
| -kmeans 12,25,0.8 | K-means segmentation: K, iterations and density:distance ratio. |
| -innervolume 2.3,15 | Calculate internal volume below this threshold, output mask frequency. |
| |