| -ytile 50,25 | Tile start and size along y dimension (default 0 and y size). |
| -rescale -0.1,5.2 | Rescale data to average and standard deviation. |
| -truncate -0.5,1.2 | Truncate data to minimum and maximum after rescaling. |
| -verbose 7 | Verbosity of output. |
| -datatype u | Force writing of a new data type. |
| -sampling 1.5,1.5,1.5 | Sampling of input images (A/pixel; a single value can be given). |
| -output new.star | Output parameter file name. |
| -reconstruction new.map | Output image file name. |