Genome

: Public Class

Created:	11/11/2008 11:32:41 AM
Modified:	3/25/2015 4:18:25 PM

Project:
Author:
Version:	1.0
Phase:	1.0
Status:
Complexity:	Easy
Difficulty:
Priority:
Multiplicity:
Advanced:
UUID:	{FE616608-9A04-409d-AA54-443303FD6E20}
Appears In:	UML-Based Comprehensive BRIDG Model Diagram, View MB: Molecular Biology

DEFINITION: An assembly of the DNA sequence in a full set of chromosomes that represent all of the inheritable traits of an organism. Comment Requested: In interest of re-using existing standards, should the above definition of Genome be replaced by the following from the NLM - An organism’s complete set of DNA, including all of its genes. [Source: http://ghr.nlm.nih.gov/handbook/hgp/genome] NOTE: Each genome contains all of the information needed to build and maintain that organism. In humans, a copy of the entire genome—more than 3 billion DNA base pairs—is contained in all cells that have a nucleus. EXAMPLE(S): Human Genome OTHER NAME(S): NOTE(S):

Attributes
Associations To
Associations From
Tagged Values

Attribute

Public ST
assemblyVersion

Details:

Alias:
Initial:
Stereotype:
Ordered:
Range:	Range:0 to 1
Transient:	False
Derived:	False
IsID:	False

Notes:

DEFINITION:#lt;br /#gt;#lt;/p#gt;#lt;p#gt;The source-specific version of the genome assembly.#lt;br /#gt;#lt;/p#gt;#lt;p#gt;#lt;br /#gt;#lt;/p#gt;#lt;p#gt;EXAMPLE(S): #lt;br /#gt;#lt;/p#gt;#lt;p#gt;(Human Genome) Build 35#lt;br /#gt;#lt;/p#gt;#lt;p#gt;#lt;br /#gt;#lt;/p#gt;#lt;p#gt;OTHER NAME(S):#lt;br /#gt;#lt;/p#gt;#lt;p#gt;#lt;br /#gt;#lt;/p#gt;#lt;p#gt;NOTE(S):#lt;br /#gt;#lt;/p#gt;

Public ST
assemblySource

Details:

Alias:
Initial:
Stereotype:
Ordered:
Range:	Range:0 to 1
Transient:	False
Derived:	False
IsID:	False

Map:LSDAM=Genome.assemblySource

Notes:

DEFINITION:#lt;br /#gt;#lt;/p#gt;#lt;p#gt;The originating source of the genome assembly.#lt;br /#gt;#lt;/p#gt;#lt;p#gt;#lt;br /#gt;#lt;/p#gt;#lt;p#gt;EXAMPLE(S): #lt;br /#gt;#lt;/p#gt;#lt;p#gt;National Center for Biotechnology Information (NCBI)#lt;br /#gt;#lt;/p#gt;#lt;p#gt;#lt;br /#gt;#lt;/p#gt;#lt;p#gt;OTHER NAME(S):#lt;br /#gt;#lt;/p#gt;#lt;p#gt;#lt;br /#gt;#lt;/p#gt;#lt;p#gt;NOTE(S):#lt;br /#gt;#lt;/p#gt;

Element	Source Role	Target Role
BiologicEntityClassification Class	Name: containedGenome	Name: containingBiologicEntityClassification
Details: DESCRIPTION:<br /></p><p>Each Genome always is part of one BiologicEntityClassification. Each BiologicEntityClassification might contain one or more Genome. <br /></p><p><br /></p><p>DEFINITION:<br /></p><p><br /></p><p>EXAMPLE(S):<br /></p><p><br /></p><p>OTHER NAME(S):<br /></p><p><br /></p><p>NOTE(S):<br /></p>

Element	Source Role	Target Role
Chromosome Class	Name: containedChromosome	Name: containingGenome
Details: DESCRIPTION:<br /></p><p>Each Chromosome always is part of one Genome. Each Genome always contains one or more Chromosome.<br /></p><p> <br /></p><p>DEFINITION:<br /></p><p><br /></p><p>EXAMPLE(S):<br /></p><p><br /></p><p>OTHER NAME(S):<br /></p><p><br /></p><p>NOTE(S):<br /></p>

Tag	Value
Map:LSDAM	Genome
Details:
Map:LSDAMv2.2.3Plus	Genome
Details: