: Public Class
Created: 8/8/2006 2:22:28 PM
Modified: 8/26/2017 1:26:29 AM
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DEFINITION:<br/>A substance or portion of material originally obtained from an entity for use in testing, examination, or study.<br/><br/>EXAMPLE(S):<br/>Blood obtained by a specimen collection activity performed on a study subject.<br/>A few grains of cattle feed obtained from a feed sack.<br/>A randomly selected pill from a blister pack.<br/>A serum specimen that resulted from Centrifugation procedure performed on a blood specimen.<br/>A DNA specimen extraction from a saliva specimen.<br/>A Formalin-Fixed, Paraffin-Embedded (FFPE) block that resulted from a paraffin embedding procedure performed on a formalin fixed tissue specimen.<br/>A pooled blood sample that resulted from a mixing procedure performed on several blood samples taken from individual animals.<br/><br/>OTHER NAME(S):<br/>Biologic specimen<br/>Product specimen<br/><br/>NOTE(S):<br/>
Attribute
Public DSET<CD>
  conditionCode
Details:
Map:CDASHv1.1=LB.LBSPCCND
Map:CTRv1.0=Specimen.conditionCode
Map:Lab=Specimen.condition
Map:LabViewer2.2=Specimen.condition
Map:NCI CRF Standard=CDE 2829883v1.0: Laboratory Specimen Condition Gross Type
Map:PGx v1.0=BS.BSSPCCND
Map:SDTM IGv3.1.1=LB.LBSPCCND
Map:SDTM IGv3.1.2=MB.MBSPCCND
Map:SDTM IGv3.1.2=LB.LBSPCCND
Map:SDTM IGv3.1.2=PC.PCSPCCND
Map:SDTM IGv3.1.3=MB.MBSPCCND
Map:SDTM IGv3.1.3=LB.LBSPCCND
Map:SDTM IGv3.1.3=PC.PCSPCCND
Notes: DEFINITION:<br/>A coded value specifying one of a discreet list of values describing the condition of the specimen at time of receipt at the lab.<br/><br/>EXAMPLE(S):<br/>Hemolyzed, Icteric, Lipemic<br/><br/>OTHER NAME(S):<br/><br/>NOTE(S):<br/>Derived from PerformedObservationResult.value(ANY=#gt;CD).code WHERE PerformedObservationResult #gt; PerformedObservation #gt; DefinedObservation.nameCode = "assess specimen condition"<br/>
Public ST.SIMPLE
  accessionNumberText
Details:
Map:CDASHv1.1=LB.LBREFID
Map:CTRv1.0=Specimen.accessionNumberText
Map:Lab=Specimen.accessionNumber
Map:LabViewer2.2=Specimen.accessionNumber
Map:NCI CRF Standard=CDE 2230047v4.0: Specimen Accession Number
Map:SDTM IGv3.1.2=LB.LBREFID
Notes: DEFINITION:<br/>An alphanumeric identifier assigned by a receiving lab to specimens that are received together as a set.<br/><br/>EXAMPLE(S):<br/><br/>OTHER NAME(S):<br/><br/>NOTE(S):<br/>Derived from SpecimenCollectionGroup.accessionNumberText if the specimen is part of a SpecimenCollectionGroup<br/>
Public CD
  typeCode
Details:
Map:CTRv1.0=Specimen.typeCode
Map:ICSRr2=Specimen.code (in R_Specimen universal)
Notes: DEFINITION:<br/>A coded value specifying the kind of the specimen derived from other specimens.<br/><br/>EXAMPLE(S):<br/>specimen, aliquot, isolate<br/><br/>OTHER NAME(S):<br/><br/>NOTE(S):<br/>The semantic represented by the Specimen.typeCode attribute has been clarified by the LSDAM team during harmonization of the LS DAM v2.2.3Plus model. The semantic actually is an identification of the kind of activity that produced the Specimen, which means it maps to PerformedMaterialProcessStep #gt; DefineMaterialProcessStep.nameCode. Therefore, the Specimen.typeCode attribute is DEPRECATED. <br/>
Element Source Role Target Role
Material
Class   		Name: performedSpecimen
  		Name: performingMaterial
 
Details:
DESCRIPTION:<br/>Each Specimen always is a function performed by one Material.  Each Material might function as one Specimen.<br/><br/>DEFINITION:<br/><br/>EXAMPLE(S):<br/><br/>OTHER NAME(S):<br/><br/>NOTE(S):<br/>
PerformedSpecimenCollection
Class   		Name: producedSpecimen
  		Name: producingPerformedSpecimenCollection
 
Details:
DESCRIPTION:<br/>Each Specimen might be a result of one PerformedSpecimenCollection. Each PerformedSpecimenCollection might result in one or more Specimen.<br/><br/>DEFINITION:<br/><br/>EXAMPLE(S):<br/><br/>OTHER NAME(S):<br/><br/>NOTE(S):<br/>
SpecimenCollectionGroup
Class   		Name: containedSpecimen
  		Name: containingSpecimenCollectionGroup
 
Details:
DESCRIPTION:<br/>Each Specimen might be a part of one SpecimenCollectionGroup. Each SpecimenCollectionGroup might contain one or more Specimen.<br/><br/>DEFINITION:<br/><br/>EXAMPLE(S):<br/><br/>OTHER NAME(S):<br/><br/>NOTE(S):<br/>
Element Source Role Target Role
ExperimentalUnit
Class   		Name: performedExperimentalUnit
  		Name: performingSpecimen
 
Details:
DESCRIPTION:<br/>Each ExperimentalUnit might be a function performed by one Specimen. Each Specimen might function as one or more ExperimentalUnit. <br/><br/>DEFINITION:<br/><br/>EXAMPLE(S):<br/><br/>OTHER NAME(S):<br/><br/>NOTE(S):<br/><br/>
DefinedSpecimenCollection
Class   		Name: producingDefinedSpecimenCollection
  		Name: producedSpecimen
 
Details:
DESCRIPTION:<br/>Each DefinedSpecimenCollection always results in one or more Specimen. Each Specimen might be a result of one or more DefinedSpecimenCollection.<br/><br/>DEFINITION:<br/><br/>EXAMPLE(S):<br/><br/>OTHER NAME(S):<br/><br/>NOTE(S):<br/><br/>
DefinedMaterialStorage
Class «DEPRECATED» 		Name: storingDefinedSpecimenStorage
  		Name: storedSpecimen
 
Details:
DESCRIPTION:<br/>Each DefinedMaterialStorage always stores one Specimen. Each Specimen might be stored during one or more DefinedMaterialStorage.<br/><br/>DEFINITION:<br/><br/>EXAMPLE(S):<br/><br/>OTHER NAME(S):<br/><br/>NOTE(S):<br/><br/>
Subject
Class   		Name: performedSubject
  		Name: performingSpecimen
 
Details:
DESCRIPTION:<br/>Each Subject might be a function performed by one Specimen. Each Specimen might function as one or more Subject.<br/><br/>DEFINITION:<br/><br/>EXAMPLE(S):<br/><br/>OTHER NAME(S):<br/><br/>NOTE(S):<br/><br/>
Tag Value
Map:CTRPv1.0 Material
Details:
 
Map:CTRRr3 BiologicSpecimen
Details:
 
Map:CTRv1.0 Specimen
Details:
 
Map:ICSRr2 Specimen (in R_Specimen universal)
Details:
 
Map:ICSRr2 Product (in R_Specimen universal)
Details:
 
Map:LabViewer2.2 Specimen
Details:
 
Object Type Connection Direction Notes
BiologicSpecimen Class Generalization From DESCRIPTION: Each BiologicSpecimen always specializes one Specimen. Each Specimen might be specialized by one BiologicSpecimen. DEFINITION: EXAMPLE(S): OTHER NAME(S): NOTE(S):