Out of Scope for HL7 Sep 2018 Ballot Cycle: Molecular Biology Sub-Domain::AminoAcidPhysicalLocation

: Public Class

Created:	10/17/2008 12:06:08 AM
Modified:	8/26/2017 2:24:22 AM

Project:
Author:
Version:	1.0
Phase:	1.0
Status:
Complexity:	Easy
Difficulty:
Priority:
Multiplicity:
Advanced:
UUID:	{C664BC04-AE15-4a01-AC3F-CDCA0EC3CC63}
Appears In:	UML-Based Comprehensive BRIDG Model Diagram, View MB: Molecular Biology

DEFINITION: A position or a region on an amino acid sequence. EXAMPLE(S): amino acids 3 to 10 of TP53 protein, amino acids 102 to 292 of TP53 protein defining a DNA binding region. OTHER NAME(S): NOTE(S):

Attributes
Associations To
Associations From
Tagged Values

Attribute

Public INT.NONNEG
startCoordinate

Details:

Alias:
Initial:
Stereotype:
Ordered:
Range:	Range:0 to 1
Transient:	False
Derived:	False
IsID:	False

Map:LSDAMv2.2.3Plus=AminoAcidPhysicalLocation.startCoordinate

Notes:

DEFINITION: The beginning coordinate of the range (inclusive), given as an integer offset from the start of the sequence. EXAMPLE(S): For amino acids 3 to 10 of the TP53 protein the start coordinate would be 3. For amino acids 102 to 292 of the TP53 protein defining a DNA binding region the start coordinate would be 102. OTHER NAME(S): NOTE(S):

Public INT.NONNEG
endCoordinate

Details:

Alias:
Initial:
Stereotype:
Ordered:
Range:	Range:0 to 1
Transient:	False
Derived:	False
IsID:	False

Map:LSDAMv2.2.3Plus=AminoAcidPhysicalLocation.startCoordinate

Notes:

DEFINITION: The terminal coordinate of the range (inclusive), given as an integer offset from the start of the sequence. EXAMPLE(S): For amino acids 3 to 10 of the TP53 protein the end coordinate would be 10. For amino acids 102 to 292 of the TP53 protein defining a DNA binding region the end coordinate would be 292. OTHER NAME(S): NOTE(S):

Element	Source Role	Target Role
AminoAcidSequence Class	Name: includingAminoAcidPhysicalLocation	Name: includedAminoAcidSequence
Details: DESCRIPTION:<br/>Each AminoAcidPhysicalLocation always includes one AminoAcidSequence. Each AminoAcidSequence might be included in one or more AminoAcidPhysicalLocation. <br/><br/>DEFINITION:<br/><br/>EXAMPLE(S):<br/><br/>OTHER NAME(S):<br/><br/>NOTE(S):<br/>

Element	Source Role	Target Role
AminoAcidSequenceFeature Class	Name: includedAminoAcidSequenceFeature	Name: includingAminoAcidPhysicalLocation
Details: DESCRIPTION:<br/>Each AminoAcidSequenceFeature always is included in one or more AminoAcidPhysicalLocation. Each AminoAcidPhysicalLocation might include one or more AminoAcidSequenceFeature.<br/><br/>DEFINITION:<br/><br/>EXAMPLE(S):<br/><br/>OTHER NAME(S):<br/><br/>NOTE(S):<br/>

Tag	Value
Map:LSDAMv2.2.3Plus	AminoAcidPhysicalLocation
Details: