repo https://github.com/CBIIT/popsci-model commit 42a651b node property value_or_TYPE associated_link associated_link_id STRING associated_link associated_link_name STRING associated_link associated_link_url STRING comorbidity comorbidity_disease_term Chronic Respiratory Illness comorbidity comorbidity_disease_term Crohn's Disease comorbidity comorbidity_disease_term Heart Disease comorbidity comorbidity_disease_term Inflammatory Bowel Disease comorbidity comorbidity_disease_term Kidney Disease data_collection data_collection_category Age, Race and Ethnicity data_collection data_collection_category Alcohol Usage data_collection data_collection_category Birthplace data_collection data_collection_category Comorbidity data_collection data_collection_category Drug Usage data_collection data_collection_category Educattion data_collection data_collection_category Nutrition data_collection data_collection_category Physical Activity data_collection data_collection_category Primary Disease data_collection data_collection_category Residence data_collection data_collection_category Sex and Gender data_collection data_collection_category Sleep data_collection data_collection_category Tobacco Usage data_collection data_collection_category_annotation_count INTEGER data_file data_file_checksum_type md5sum data_file data_file_checksum_type sha1 data_file data_file_checksum_type sha256 data_file data_file_checksum_value STRING data_file data_file_compression_status Compressed data_file data_file_compression_status Uncompressed data_file data_file_compression_status Unknown data_file data_file_description STRING data_file data_file_format docx data_file data_file_format gz data_file data_file_format pdf data_file data_file_format vcf data_file data_file_format zip data_file data_file_location STRING data_file data_file_name STRING data_file data_file_size NUMBER data_file data_file_type Clinical Report data_file data_file_type File Collection data_file data_file_type Variant Call File data_file data_file_type Variant Report data_file data_file_uuid STRING primary_diagnosis primary_diagnosis_disease_term Acute Myeloid Leukemia Not Otherwise Specified primary_diagnosis primary_diagnosis_disease_term Adenocarcinoma of the Gastroesophageal Junction primary_diagnosis primary_diagnosis_disease_term Colorectal Carcinoma primary_diagnosis primary_diagnosis_disease_term Invasive Breast Carcinoma primary_diagnosis primary_diagnosis_disease_term Melanoma primary_diagnosis primary_diagnosis_disease_term Non-Small Cell Lung Carcinoma primary_diagnosis primary_diagnosis_disease_term Ovarian Carcinoma primary_diagnosis primary_diagnosis_disease_term Plasma Cell Myeloma primary_diagnosis primary_diagnosis_disease_term Prostate Carcinoma primary_diagnosis primary_diagnosis_disease_term Small Cell Lung Carcinoma program program_name STRING program program_short_name STRING project project_name STRING project project_short_name STRING publication authorship STRING publication digital_object_id STRING publication journal_citation STRING publication publication_title STRING publication pubmed_id NUMBER publication year_of_publication NUMBER study biospecimen_collection No study biospecimen_collection Yes study dbgap_accession_id STRING study number_of_participants INTEGER study study_beginning_year NUMBER study study_description STRING study study_design Case Series study study_design Case-Control study study_design Cohort study study_design Cross-sectional study study_ending_year NUMBER study study_id STRING study study_name STRING study study_phs_id STRING study study_short_name STRING study study_status Active study study_status Closed study study_status Completed study study_type Adverse Effect Mitigation Study study study_type Ancillary Study study study_type Basic Science Research study study_type Correlative Study study study_type Cure Study study study_type Device Feasibility Study study study_type Diagnosis Study study study_type Disease Modifying Treatment Study study study_type Early Detection Study study study_type Education Training Clinical Study study study_type Epidemiology Research study study_type Genomics Research study study_type Health Services Research study study_type Imaging Research study study_type Observational Study study study_type Outcomes Research study study_type Prevention Study study study_type Proteomic Research study study_type Rehabilitation Clinical Study study study_type Screening Study study study_type Supportive Care Study study study_type Transcriptomics Research study study_type Treatment Study study_country study_country STRING study_demographic ncbi_taxonomy_id INTEGER study_demographic ncbi_taxonomy_name STRING study_demographic study_participant_maximum_age INTEGER study_demographic study_participant_median_age NUMBER study_demographic study_participant_minimum_age INTEGER study_personnel person_email_address STRING study_personnel person_first_name STRING study_personnel person_last_name STRING study_personnel person_middle_name STRING study_personnel person_orcid_id STRING study_personnel person_role Data Analyst study_personnel person_role Data Coordinator study_personnel person_role General Dogs Body study_personnel person_role Principal Investigator study_personnel person_role Statistician study_state_province_territory study_state_province_territory STRING relationship source_node destination_node property value_or_TYPE associated_with study_personnel study NA NA associated_with data_collection study NA NA associated_with publication study NA NA associated_with associated_link study NA NA associated_with comorbidity study NA NA associated_with study_state_province_territory study NA NA associated_with study_demographic study NA NA associated_with study_country study NA NA associated_with primary_diagnosis study NA NA associated_with data_file study NA NA belongs_to study program NA NA belongs_to study project NA NA belongs_to project program NA NA property description associated_link_id A unique identifier of each associated link record, used to identify the correct associated link records during data updates.
NO CDE REQUIRED authorship A list of authors for the cited work. More specifically, for publications with no more than three authors, authorship quoted in full; for publications with more than three authors, authorship abbreviated to first author et al.
NOT CURRENTLY ASSIGNED ANY CDE biospecimen_collection A Boolean indication as to whether the study in question included the collection of biospecimens from any of the participants enrolled in the study, that gives no indication as to the type and/or number of any such biospecimens.
NOT CURRENTLY ASSIGNED ANY CDE comorbidity_disease_term text here
NOT CURRENTLY ASSIGNED ANY CDE data_collection_category text here
NOT CURRENTLY ASSIGNED ANY CDE data_collection_category_annotation_count text here
NOT CURRENTLY ASSIGNED ANY CDE data_file_checksum_type The method by which the file checksum was calculated.
CDE ID = 11475057 data_file_checksum_value A small-sized block of data derived from a file for the purpose of detecting errors that may have been introduced during file transmission and/or storage and used to verify data integrity.
CDE ID = 11480133 data_file_compression_status The state of data when saved to storage space or during data transmission.
CDE ID = 11387114 data_file_description A free text field that can be used to document the content and other details about an electronic file that may not be captured elsewhere. For example, the file's derivation from a specimen of normal tissue versus tumor tissue.
CDE ID = 11280338 data_file_format A defined organization or layout representing and structuring data in a computer file; the electronic format of the file, as derived during file validation
With the actual values of this property being loader derived, the acceptable values currently specified are in place only to support the generation of mock data
CDE ID = 11416926 data_file_location The specific location within the S3 storage bucket at which the file is stored, expressed in terms of a unique url
NO CDE REQUIRED data_file_name The literal label for an electronic data file, inclusive of file extension(s).
CDE ID = 11284037 data_file_size The measure, expressed in bytes, as to how much space a data file takes up on a storage medium.
CDE ID = 11479876 data_file_type A curated indicator as to the type of content represented by the data file
NOT CURRENTLY ASSIGNED ANY CDE data_file_uuid text NO CDE REQUIRED dbgap_accession_id The dbGaP-assigned identifier by which the study in question is known.
NOT CURRENTLY ASSIGNED ANY CDE digital_object_id Where applicable, the digital object identifier for the cited work, by which it can be permanently identified, and linked to via the internet.
Values of this property must contain only the alphanumeric string of the digital object identifier itself, exclusive of any prefix such as "DOI:", such that values can be correctly interpreted and displayed as hyperlinks within the application.
NOT CURRENTLY ASSIGNED ANY CDE ethnicity The text for reporting information about ethnicity based on the Office of Management and Budget (OMB) categories.
NOT CURRENTLY ASSIGNED ANY CDE gender Characteristics of people that are socially constructed, including norms, behaviors, and roles based on their sex. As a social construct, these norms, behaviors, and roles vary from society to society and can change over time.
CDE ID = 10748236 journal_citation The name of the journal in which the cited work was published, inclusive of the citation itself in terms of journal volume number, part number where applicable, and page numbers.
NOT CURRENTLY ASSIGNED ANY CDE ncbi_taxonomy_id A label provided by NCBI Taxonomy Database (https://www.ncbi.nlm.nih.gov/taxonomy/), which uniquely identifies group or category, at any level, in a system for classifying plants or animals (including humans) providing ranked categories for the classification of organisms according to their suspected evolutionary relationships.
CDE ID = 10543100 ncbi_taxonomy_name The textual label associated with a subject's organismal classification as captured in the National Center for Biotechnology Information (NCBI) Taxonomy standard nomenclature and classification repository.
Supposedly enumerated but no permissible values specified.
CDE ID = 10543082 number_of_participants The total number of participants included in the study as of its submission.
NOT CURRENTLY ASSIGNED ANY CDE person_email_address text
NOT CURRENTLY ASSIGNED ANY CDE person_first_name The first or given name of each individual who is responsible for or directly involved in the conduct and/or analysis of the clinical trial or research project.
CDE ID = 10624731 person_last_name The last or family name of each individual responsible for or directly involved in the conduct and/or analysis of the clinical trial or research project.
CDE ID = 10624733 person_middle_name The middle name of each individual responsible for or directly involved in the conduct and/or analysis of the clinical trial or research project.
CDE ID = 10624732 person_orcid_id A persistent unique digital identifier assigned to a principal investigator by the Open Researcher and Contributor ID (ORCID) organization.
CDE ID = 10624734 person_role An indicator as to the role(s) and/or responsibilities of each individual responsible for or directly involved in the conduct and/or analysis of the clinical trial or research project. Each such individual must have at least one specified role, but any given indivdual may be assigned multiple roles for the study in question.
NOT CURRENTLY ASSIGNED ANY CDE primary_diagnosis_disease_term text here
NOT CURRENTLY ASSIGNED ANY CDE program_name The narrative title used to refer to a broad framework (an administrative umbrella) of goals under which related projects or other research activities are grouped. Example - Clinical Proteomic Tumor Analysis.
CDE ID = 11444542 program_short_name An acronym or abbreviated form of the title of a broad framework of goals under which related projects or other research activities are grouped. For example, CPTAC.
CDE ID = 11459801
This property is used as the key via which child records, e.g. project and/or study/trial records, can be associated with the appropriate program during data loading, and to identify the correct records during data updates. project_name The narrative title used to refer to an organ-, site-, disease- or phase-specific data collection within a broad framework of goals under which related studies or other research activities are grouped.
CDE ID = 11459804 project_short_name An acronym or abbreviated form of the title used to refer to an organ-, site- or disease-specific data collection within a broad framework of goals under which related studies or other research activities are grouped.
CDE ID = 11459806
This property is used as the key via which child records, e.g. study/trial, image collection and principal investigator records, can be associated with the appropriate project during data loading, and to identify the correct records during data updates. property_1 text property_2 text property_3 text publication_title The full title of the publication stated exactly as it appears on the published work.
This property is used as the key via which to identify the correct records during data updates.
NOT CURRENTLY ASSIGNED ANY CDE pubmed_id Where applicable, the unique numerical identifier assigned to the cited work by PubMed, by which it can be linked to via the internet.
Values of this property must contain only the numeric string of the PubMed ID itself, exclusive of any prefix such as "PMID:", such that values can be correctly interpreted and displayed as hyperlinks within the application.
NOT CURRENTLY ASSIGNED ANY CDE race The text for reporting information about race based on the Office of Management and Budget (OMB) categories.
NOT CURRENTLY ASSIGNED ANY CDE sex text CDE ID = 6343385 study_beginning_year The year in which the study began enrolling study perticipants.
NOT CURRENTLY ASSIGNED ANY CDE study_country text here
NOT CURRENTLY ASSIGNED ANY CDE study_description A narrative description of the study outlining its design, conduct and data collection goals.
NOT CURRENTLY ASSIGNED ANY CDE study_design Text here
NOT CURRENTLY ASSIGNED ANY CDE study_ending_year The year in which the study completed data collection.
NOT CURRENTLY ASSIGNED ANY CDE study_id Any external identifier by which the study in question is already known.
NOT CURRENTLY ASSIGNED ANY CDE study_name The narrative title used as a textual label for a research data collection.
CDE ID = 11459810 study_participant_maximum_age text here
NOT CURRENTLY ASSIGNED ANY CDE study_participant_median_age text here
NOT CURRENTLY ASSIGNED ANY CDE study_participant_minimum_age text here
NOT CURRENTLY ASSIGNED ANY CDE study_phs_id The PHS-assigned identifier by which the study in question is known.
NOT CURRENTLY ASSIGNED ANY CDE study_short_name The acronym or abbreviated form of the title for a research data collection.
CDE ID = 11459812
This property is used as the key via which child records, e.g. the study demographic record and disease coverage records, can be associated with the appropriate study during data loading, and to identify the correct records during data updates. study_state_province_territory text here
NOT CURRENTLY ASSIGNED ANY CDE study_status An indicator as to the status of the study as of its submission.
NOT CURRENTLY ASSIGNED ANY CDE study_type A classification of the study based upon the primary intent of the study's activities.
CDE ID = 11160683 year_of_publication The year in which the cited work was published.
NOT CURRENTLY ASSIGNED ANY CDE