balpha.cpp File Reference

Program to make and analyze alpha helices. More...

#include "rwmolecule.h"
#include "mol_alpha.h"
#include "mol_util.h"
#include "options.h"
#include "utilities.h"
#include "timer.h"

Functions
int	main (int argc, char **argv)

Variables
int	verbose
const char *	use []

Detailed Description

Program to make and analyze alpha helices.

Author

Bernard Heymann

Date

Created: 20050315

Modified: 20050322

Function Documentation

main()

int main	(	int	argc,
		char **	argv
	)

Variable Documentation

use

const char* use[]

Initial value:

= {
" ",
"Usage: balpha [options] [input.pdb] output.pdb",
"----------------------------------------------",
"Creates and manipulates alpha helices.",
" ",
"Actions:",
"-create 12               Create an alpha helix of a given length.",
"-helix 213,236           Set residues to a helix (all molecules).",
"-find                    Find a helix center and orientation (only for a single helix).",
"-set                     Set a helix to the standard orientation (only for a single helix).",
"-consolidate             Consolidate a set of helices to eliminate redundancy.",
" ",
"Parameters:",
"-verbose 7               Verbosity of output.",
" ",
NULL
}

verbose

int verbose

extern