Program to handle dual tomographic tilt series. More...

#include "rwmg.h"
#include "mg_processing.h"
#include "mg_img_proc.h"
#include "mg_tomography.h"
#include "mg_tomo_track.h"
#include "ps_marker.h"
#include "utilities.h"
#include "options.h"
#include "timer.h"

Functions
int	main (int argc, char **argv)

Variables
int	verbose

const char *	use []

Detailed Description

Program to handle dual tomographic tilt series.

Author: Bernard Heymann, Jessica Mavadia, Charith Jayasinghe

Date: Created: 20071114; Modified: 20160617

Function Documentation

◆ main()

int main	(	int	argc,
		char **	argv
	)

Variable Documentation

◆ use

const char* use[]

Initial value:

= {
" ",
"Usage: bdual [options] input1.star [input2.star]",
"------------------------------------------------",
"Handles dual tomographic tilt series of micrographs.",
"Expects exactly two input parameter files corresponding to the two tilt series.",
"Outputs only the second series to a parameter file.",
" ",
"Actions:",
"-seed 1.3,-95,75         Transfers seed markers from first to second series,",
"                         using the angular increment to test for rotation angle,",
"                         within the angular limits (default -180,180).",
"-refine                  Refines markers from the second series after transfer.",
"-transform               Calculates the correct micrograph transformations for the 2nd series.",
"-deselect 5-9,33         Deselect markers by id from all micrographs and models.",
"-zcompare                Compare Z coordinates of the first and second series.",
" ",
"Parameters:",
"-verbose 7               Verbosity of output.",
"-sampling 1.5,1.5,1.5    Sampling (A/pixel; a single value can be given).",
"-resolution 900,300      High and low resolution limits for cross-correlation (default 0.1,1000 angstrom).",
"-shiftlimit 155.5        Limit on micrograph shift search in pixels (default 20% of micrograph width).",
" ",
"Output:",
"-output file.star        Output parameter file for 2nd series.",
"-Postscript out.ps       Postscript output with Z coordinate error plots.",
"-bild out.bld            BILD output with fitted marker models.",
" ",
NULL
}

◆ verbose

int verbose

extern