bimport.cpp File Reference

Generate parameter files from a cisTEM hierarchy. More...

#include "mg_processing.h"
#include "rwmg.h"
#include "mg_ctf.h"
#include "file_util.h"
#include "linked_list.h"
#include "utilities.h"
#include "options.h"
#include "timer.h"

Functions
Bproject *	generate_project_from_files (Bstring &framepath, Bstring &mgpath, Bstring &partpath, Bstring &pspath, long mg_per_field, int flags)
int	main (int argc, char **argv)
Bstring	path_and_extension (Bstring &fn)
long	project_add_files (Bproject *project, vector< string > &files, int ftype, long number)

Variables
int	verbose
const char *	use []

Detailed Description

Generate parameter files from a cisTEM hierarchy.

Author

Bernard Heymann

Date

Created: 20210412

Modified: 20210413

Function Documentation

generate_project_from_files()

Bproject * generate_project_from_files	(	Bstring &	framepath,
		Bstring &	mgpath,
		Bstring &	partpath,
		Bstring &	pspath,
		long	mg_per_field,
		int	flags
	)

main()

int main	(	int	argc,
		char **	argv
	)

path_and_extension()

Bstring path_and_extension

(

Bstring &

fn

)

project_add_files()

long project_add_files	(	Bproject *	project,
		vector< string > &	files,
		int	ftype,
		long	number
	)

Variable Documentation

use

const char* use[]

Initial value:

= {
" ",
"Usage: bimport [options] Assets",
"-------------------------------",
"Generates a micrograph parameter file from directories of files.",
" ",
"Parameters:",
"-verbose 7               Verbosity of output.",
"-sampling 1.5,1.5,1      Sampling (A/pixel, one value sets all).",
"-assets Assets           Generate from cisTEM assets (modified by specifying other paths).",
"-framepath movies,tif    Path for movie frames and extension.",
"-mgpath images,mrc       Path for micrographs and extension.",
"-partpath images,pif     Path for particles and extension.",
"-pspath powerspec,map    Path for power spectra and extension.",
"-numberperfield 3        Number of micrographs per field-of-view (default 1).",
 
" ",
 
 
 
"Output:",
"-output file.star        Output parameter file.",
" ",
NULL
}

verbose

int verbose

extern