Program to generate symmetry axes for mark group symmetries. More...

#include "rwmg.h"
#include "mg_processing.h"
#include "mg_tomography.h"
#include "mg_tomo_track.h"
#include "mg_marker.h"
#include "marker.h"
#include "file_util.h"
#include "utilities.h"
#include "options.h"
#include "timer.h"

Functions
int	main (int argc, char **argv)

Variables
int	verbose

const char *	use []

Detailed Description

Program to generate symmetry axes for mark group symmetries.

Author: Bernard Heymann

Date: Created: 20020619; Modified: 20150212

Function Documentation

◆ main()

int main	(	int	argc,
		char **	argv
	)

Variable Documentation

◆ use

const char* use[]

Initial value:

= {
" ",
"Usage: bmark [options] in.star [in2.star...]",
"--------------------------------------------",
"Operates on sets of micrograph markers.",
" ",
"Actions:",
"-reconstructions         Operate on reconstruction parameters rather than micrographs.",
"-list                    List all micrograph and reconstruction markers.",
"-rotate 0.3,0.1,-0.5,81  Rotate around an axis by an angle.",
"-scale 0.5,3,1           Scale.",
"-translate 12.2,0.5,-50  Shift after rotation and scaling.",
"-plane                   Calculate a plane through the markers.",
"-fom 0.55                Select markers with a figure-of-merit above this cutoff.",
" ",
"Parameters:",
"-verbose 7               Verbosity of output.",
"-origin 0,22.5,30        Set the origin for rotation.",
 
" ",
"Output:",
"-output out.star         Output micrograph parameter file.",
" ",
NULL
}

◆ verbose

int verbose

extern