bnorm.cpp File Reference

Program to normalize a set of images based on their histograms. More...

#include "rwimg.h"
#include "rwmg.h"
#include "mg_processing.h"
#include "mg_tomography.h"
#include "mg_img_proc.h"
#include "file_util.h"
#include "utilities.h"
#include "options.h"
#include "timer.h"

Functions
int	main (int argc, char **argv)

Variables
int	verbose
const char *	use []

Detailed Description

Program to normalize a set of images based on their histograms.

Author

Bernard Heymann

Date

Created: 20030411

Modified: 20160617

Function Documentation

main()

int main	(	int	argc,
		char **	argv
	)

Variable Documentation

use

const char* use[]

Initial value:

= {
" ",
"Usage: bnorm [options] input.star/input.img [input2.star/output.img]",
"--------------------------------------------------------------------",
"Normalizes a set of images based on their histograms.",
" ",
"Actions:",
"-replacemaxima 57.5      Replace maxima above the given threshold with surrounding average.",
"-type simple             Normalization type: simple, Gaussian or Poisson.",
"-local 25                Normalization using local average and standard deviation.",
"-truncate -0.5,1.2       Truncate data to minimum and maximum before mass normalization.",
"-rescale 0.5,1.5         Average and standard deviation for output.",
"-images                  Input slices of a single 3D image as 2D images.",
"-slices                  Output 2D images as z-slices of a single 3D image.",
" ",
"Parameters:",
"-verbose 7               Verbosity of output.",
"-datatype u              Force writing of a new data type.",
" ",
"Output:",
"-output file.star        Output parameter file.",
" ",
NULL
}

verbose

int verbose

extern