Program to patch tiled image files. More...

#include "rwmg.h"
#include "rwimg.h"
#include "file_util.h"
#include "utilities.h"
#include "options.h"
#include "timer.h"
#include <fstream>

Functions
Bimage *	img_patch (Bstring *file_list, Bstring tile_file, DataType nudatatype, double cutmin, double cutmax, double nuavg, double nustd)
	Assembles overlapping tiles into a single image. More...

int	main (int argc, char **argv)

int	img_pack_into_image (Bimage p, Bimage ppatch, Vector3< int > start, Vector3< int > overlap)

Variables
int	verbose

const char *	use []

Detailed Description

Program to patch tiled image files.

Author: Bernard Heymann

Date: Created: 20040712; Modified: 20190218

Function Documentation

◆ img_pack_into_image()

int img_pack_into_image	(	Bimage *	p,
		Bimage *	ppatch,
		Vector3< int >	start,
		Vector3< int >	overlap
	)

◆ img_patch()

Bimage * img_patch	(	Bstring *	file_list,
		Bstring	tile_file,
		DataType	nudatatype,
		double	cutmin,
		double	cutmax,
		double	nuavg,
		double	nustd
	)

Assembles overlapping tiles into a single image.

Parameters

*file_list	list of files with tiles.
tile_file	text file specifying the tile size, overlap and locations.
nudatatype	new data type to convert to.
cutmin	minimum to truncate each tile before assembly.
cutmax	maximum to truncate each tile before assembly.
nuavg	new average to set each tile before assembly.
nustd	new standard deviation to set each tile before assembly.

Returns

Bimage* new composite image.

Each tile extents halfway into overlapped areas, representing a step
function between tiles.

◆ main()

int main	(	int	argc,
		char **	argv
	)

Variable Documentation

◆ use

const char* use[]

Initial value:

= {
" ",
"Usage: bpatch [options] input.images/input.star",
"-----------------------------------------------",
"Patches a list of tiles together with overlap.",
"Requires a text file generated by btile that specifies the size and order of the tiles.",
"Any number of input images may be given and may include the wild card \"*\".",
"All images must have the same data type.",
" ",
"Parameters:",
"-verbose 3               Verbosity of output.",
"-datatype u              Force writing of a new data type.",
"-sampling 1.5,1.5,1.5    Sampling (A/pixel; a single value can be given).",
"-origin 0.8,-10,15.7     Set the origin of the output image (default 0,0,0).",
"-size 1024,1024,120      Output image size (default from tile file).",
"-mode 1                  Overlap handling: 0=average(default), 1=weigh, 2=central.",
"-rescale 127,27.5        Rescale all input data to average and standard deviation.",
"-truncate -5,5.5         Truncate data to minimum and maximum after rescaling.",
" ",
"Input:",
"-tiles text.tiles        Text file with overall size and tile origins.",
" ",
"Output:",
"-output output.img       Output image (default patch.pif).",
"-parameters file.star    Output micrograph parameter file.",
" ",
NULL
}

◆ verbose

int verbose

extern

Functions

Variables