mol Directory Reference

Files
file	mol_alpha.cpp
	Functions to make and analyze alpha helices.
file	mol_bonds.cpp
	Functions for molecular dynamics.
file	mol_compare.cpp
	Library routines used to compare sets of atomic coordinates.
file	mol_edit.cpp
	Library routines used for atomic coordinates.
file	mol_map_energy.cpp
	Functions to calculate estimates of the fitting of molecules to maps.
file	mol_md.cpp
	Functions for molecular dynamics.
file	mol_monte.cpp
	Functions for a monte carlo metroplis algorithm to energy minimize molecular positions.
file	mol_param.cpp
	Functions to extract parameters from coordinate files.
file	mol_select.cpp
	Library routines to select atomic coordinates.
file	mol_symmetry.cpp
	Library routines used for symmetry operations on atomic coordinates.
file	mol_transform.cpp
	Library routines used for atomic coordinate transformations.
file	mol_util.cpp
	Library routines used for atomic coordinates.
file	mol_water.cpp
	Generating and managing water.
file	molecule_to_map.cpp
	Functions to calculate a 3D map from atomic coordinates.
file	seq_align.cpp
	Library routines to generate and analyze dot plots.
file	seq_analysis.cpp
	Analysis of protein sequences.
file	seq_util.cpp
	Sequence utility functions.