Finds particles (subtomograms) in a tomographic reconstruction and refines their origins and orientations. More...

#include "rwimg.h"
#include "mg_subtomo.h"
#include "mg_processing.h"
#include "mg_particle_select.h"
#include "mg_extract.h"
#include "mg_img_proc.h"
#include "rwmg.h"
#include "ps_micrograph.h"
#include "Matrix.h"
#include "linked_list.h"
#include "file_util.h"
#include "options.h"
#include "utilities.h"
#include "timer.h"

Functions
int	main (int argc, char **argv)

Variables
int	verbose

const char *	use []

Detailed Description

Finds particles (subtomograms) in a tomographic reconstruction and refines their origins and orientations.

Author: Juha Huiskonen (JTH); Bernard Heymann

Date

Created: 20071010

Modified: 20080630 -rescale option.

Modified: 20081124 option to write star files of extracted particles

Modified: 20081128 rescaling of the map moved to main loop, output files will be float by default

Modified: 20100503 changes to how extract mode handles particle origins

Modified: 20100511 target map cropped for refinement, cropped map rescaled

Modified: 20120123 (BH)

Modified: 20120308

Modified: 20120316 added an option to limit shifts along view vectors

Modified: 20120329 added functional topp and topn options

Modified: 20131129 (BH)

Modified: 20150108 (BH) - incorporated into Bsoft

Modified: 20150806 (BH)

Based on the code by Bernard Heymann (BH) (bfind.c in bsoft)

Function Documentation

◆ main()

int main	(	int	argc,
		char **	argv
	)

Variable Documentation

◆ use

const char* use[]

◆ verbose

int verbose

extern