Generates views covering an asymmetric unit or all symmetry related views. More...

#include "rwmg.h"
#include "utilities.h"
#include "options.h"
#include "timer.h"
#include "mg_processing.h"
#include "mg_extract.h"
#include "mg_subtomo.h"
#include "spline.h"
#include "random_numbers.h"
#include <fstream>

Functions
int	pdb_matrices_from_particles (Bparticle *part, Vector3< double > sampling, Bstring &filename)
	Generates PDB file matrices from particle views and locations. More...

int	cmm_views (Bstring &filename, Bparticle *part, Vector3< double > sampling, long part_sel, double fom_cutoff, double colorfom_min, double colorfom_max, RGB< double > color, double diameter, double length, double thickness)

int	main (int argc, char **argv)

Variables
int	verbose

const char *	use []

Detailed Description

Generates views covering an asymmetric unit or all symmetry related views.

Author: Juha Huiskonen; Bernard Heymann

Date

Created: 20071203

Modified: 20080925

Modified: 20081126 added shift option

Modified: 20090204 added asymmetric unit views

Modified: 20090205 added random views

Modified: 20090206 added PDB output

Modified: 20090408 added generate views option

Modified: 20100527 added -Grid option

Modified: 20110510 changed the orientation of the views when creating a Chimera marker file

Modified: 20111208 added -Top option

Modified: 20120123 (BH)

Modified: 20120316 added -randomizealpha option

Modified: 20150108 (BH) - incorporated into Bsoft

Writes particle views into a Chimera markerfile for visualization
Writes particle orientations into a PDB file as BIOIMT matrices 
(these can be combined with a pseudoatomic model of the template, and all orientations 
can be visualized in Chimera)

Function Documentation

◆ cmm_views()

int cmm_views	(	Bstring &	filename,
		Bparticle *	part,
		Vector3< double >	sampling,
		long	part_sel,
		double	fom_cutoff,
		double	colorfom_min,
		double	colorfom_max,
		RGB< double >	color,
		double	diameter,
		double	length,
		double	thickness
	)

◆ main()

int main	(	int	argc,
		char **	argv
	)

◆ pdb_matrices_from_particles()

int pdb_matrices_from_particles	(	Bparticle *	part,
		Vector3< double >	sampling,
		Bstring &	filename
	)

Generates PDB file matrices from particle views and locations.

Parameters

*part	list of particles.
sampling	spatial sampling.
&filename	PDB file with matrices.

Returns: int 0. Writes a PDB file. Uses the BIOMT records.

Variable Documentation

◆ use

const char* use[]

◆ verbose

int verbose

extern

Functions

Variables