![]() |
Bsoft 2.1.4
Bernard's software package
|
All STAR and XML file format tags for micrographs and reconstructions. More...
Macros | |
#define | COMMENT "comment" |
#define | ID "id" |
#define | PROJECT "project" |
#define | FIELD "field" |
#define | FIELD_ID "field.id" |
#define | FIELD_SELECT "field.select" |
#define | FIELD_FOM "field.fom" |
#define | MAP "map.3D_reconstruction" |
#define | MAP_ID "map.3D_reconstruction.id" |
#define | MAP_REFERENCE "map.reference.file_name" |
#define | MAP_RECONSTRUCTION "map.3D_reconstruction.file_name" |
#define | MAP_TRANSFORM_FILE "map.3D_reconstruction_fourier_transform.file_name" |
#define | MAP_POWERSPEC_FILE "map.3D_reconstruction_powerspectrum.file_name" |
#define | MAP_SIZE_X "map.3D_reconstruction.size_x" |
#define | MAP_SIZE_Y "map.3D_reconstruction.size_y" |
#define | MAP_SIZE_Z "map.3D_reconstruction.size_z" |
#define | MAP_ORIGIN_X "map.3D_reconstruction.origin_x" |
#define | MAP_ORIGIN_Y "map.3D_reconstruction.origin_y" |
#define | MAP_ORIGIN_Z "map.3D_reconstruction.origin_z" |
#define | MAP_SCALE_X "map.3D_reconstruction.scale_x" |
#define | MAP_SCALE_Y "map.3D_reconstruction.scale_y" |
#define | MAP_SCALE_Z "map.3D_reconstruction.scale_z" |
#define | MAP_VOXEL_SIZE "map.3D_reconstruction.voxel_size" |
#define | MAP_VOXEL_SIZE_X "map.3D_reconstruction.voxel_size_x" |
#define | MAP_VOXEL_SIZE_Y "map.3D_reconstruction.voxel_size_y" |
#define | MAP_VOXEL_SIZE_Z "map.3D_reconstruction.voxel_size_z" |
#define | MAP_SELECT "map.3D_reconstruction.select" |
#define | MAP_FOM "map.3D_reconstruction.fom" |
#define | MAP_MAGNIFICATION "map.magnification" |
#define | MAP_VIEW_X "map.view_x" |
#define | MAP_VIEW_Y "map.view_y" |
#define | MAP_VIEW_Z "map.view_z" |
#define | MAP_VIEW_ANGLE "map.view_angle" |
#define | MAP_BACK_RWEIGHT "map.back_projection.rweight" |
#define | MAP_MODEL "map.model" |
#define | MAP_SYMMETRY "map.symmetry" |
#define | MICROGRAPH "micrograph" |
#define | MICROGRAPH_FILE "micrograph.file_name" |
#define | MICROGRAPH_FRAMES_FILE "micrograph_frames.file_name" |
#define | MICROGRAPH_FRAME "micrograph_frame.number" |
#define | MICROGRAPH_FRAME_PIXEL_X "micrograph_frame.pixel_size_x" |
#define | MICROGRAPH_FRAME_PIXEL_Y "micrograph_frame.pixel_size_y" |
#define | MICROGRAPH_FRAME_PIXEL_Z "micrograph_frame.pixel_size_z" |
#define | MICROGRAPH_FRAME_SHIFT_X "micrograph_frame.shift_x" |
#define | MICROGRAPH_FRAME_SHIFT_Y "micrograph_frame.shift_y" |
#define | MICROGRAPH_FRAME_SELECT "micrograph_frame.select" |
#define | MICROGRAPH_FRAME_FOM "micrograph_frame.fom" |
#define | MICROGRAPH_PARTICLE_FILE "micrograph_particle.file_name" |
#define | MICROGRAPH_FILAMENT_FILE "micrograph_filament.file_name" |
#define | MICROGRAPH_TRANSFORM_FILE "micrograph_fourier_transform.file_name" |
#define | MICROGRAPH_POWERSPEC_FILE "micrograph_powerspectrum.file_name" |
#define | MICROGRAPH_ID "micrograph.id" |
#define | MICROGRAPH_FIELD_ID "micrograph.field_id" |
#define | MICROGRAPH_NUMBER "micrograph.number" |
#define | MICROGRAPH_SELECT "micrograph.select" |
#define | MICROGRAPH_FOM "micrograph.fom" |
#define | MICROGRAPH_MAGNIFICATION "micrograph.magnification" |
#define | MICROGRAPH_SAMPLING "micrograph.sampling" |
#define | MICROGRAPH_PIXEL "micrograph.pixel_size" |
#define | MICROGRAPH_PIXEL_X "micrograph.pixel_size_x" |
#define | MICROGRAPH_PIXEL_Y "micrograph.pixel_size_y" |
#define | MICROGRAPH_PIXEL_Z "micrograph.pixel_size_z" |
#define | MICROGRAPH_UNITS "micrograph.units" |
#define | MICROGRAPH_DOSE "micrograph.electron_dose" |
#define | MICROGRAPH_EXPOSURE "micrograph.exposure" |
#define | MICROGRAPH_INTENSITY "micrograph.intensity" |
#define | MICROGRAPH_WATER_RING "micrograph.water_ring_index" |
#define | MICROGRAPH_ORIGIN_X "micrograph.origin_x" |
#define | MICROGRAPH_ORIGIN_Y "micrograph.origin_y" |
#define | MICROGRAPH_ORIGIN_Z "micrograph.origin_z" |
#define | MICROGRAPH_SCALE_X "micrograph.scale_x" |
#define | MICROGRAPH_SCALE_Y "micrograph.scale_y" |
#define | MICROGRAPH_SCALE_Z "micrograph.scale_z" |
#define | MICROGRAPH_TILT_AXIS "micrograph.tilt_axis" |
#define | MICROGRAPH_TILT_ANGLE "micrograph.tilt_angle" |
#define | MICROGRAPH_LEVEL_ANGLE "micrograph.level_angle" |
#define | MICROGRAPH_ROT_ANGLE "micrograph.rotation_angle" |
#define | MICROGRAPH_VIEW_X "micrograph.view_x" |
#define | MICROGRAPH_VIEW_Y "micrograph.view_y" |
#define | MICROGRAPH_VIEW_Z "micrograph.view_z" |
#define | MICROGRAPH_VIEW_ANGLE "micrograph.view_angle" |
#define | MICROGRAPH_MATRIX_1_1 "micrograph.matrix_1_1" |
#define | MICROGRAPH_MATRIX_1_2 "micrograph.matrix_1_2" |
#define | MICROGRAPH_MATRIX_1_3 "micrograph.matrix_1_3" |
#define | MICROGRAPH_MATRIX_2_1 "micrograph.matrix_2_1" |
#define | MICROGRAPH_MATRIX_2_2 "micrograph.matrix_2_2" |
#define | MICROGRAPH_MATRIX_2_3 "micrograph.matrix_2_3" |
#define | MICROGRAPH_MATRIX_3_1 "micrograph.matrix_3_1" |
#define | MICROGRAPH_MATRIX_3_2 "micrograph.matrix_3_2" |
#define | MICROGRAPH_MATRIX_3_3 "micrograph.matrix_3_3" |
#define | MICROGRAPH_HVEC_X "micrograph.h_x" |
#define | MICROGRAPH_HVEC_Y "micrograph.h_y" |
#define | MICROGRAPH_HVEC_Z "micrograph.h_z" |
#define | MICROGRAPH_KVEC_X "micrograph.k_x" |
#define | MICROGRAPH_KVEC_Y "micrograph.k_y" |
#define | MICROGRAPH_KVEC_Z "micrograph.k_z" |
#define | MICROGRAPH_LVEC_X "micrograph.l_x" |
#define | MICROGRAPH_LVEC_Y "micrograph.l_y" |
#define | MICROGRAPH_LVEC_Z "micrograph.l_z" |
#define | MICROGRAPH_HELIX_AXIS "micrograph.helix_axis_angle" |
#define | MICROGRAPH_HELIX_RISE "micrograph.helix_subunit_rise" |
#define | MICROGRAPH_HELIX_ANGLE "micrograph.helix_subunit_angle" |
#define | MICROGRAPH_HELIX_RADIUS "micrograph.helix_radius" |
#define | MICROGRAPH_VOLTAGE "micrograph.voltage" |
#define | MICROGRAPH_CTF_CS "micrograph.ctf.Cs" |
#define | MICROGRAPH_CTF_CC "micrograph.ctf.Cc" |
#define | MICROGRAPH_CTF_ALPHA "micrograph.ctf.alpha" |
#define | MICROGRAPH_CTF_DE "micrograph.ctf.energy_spread" |
#define | MICROGRAPH_CTF_AMP_CONT "micrograph.ctf.amp_contrast" |
#define | MICROGRAPH_CTF_ZERO "micrograph.ctf.first_zero" |
#define | MICROGRAPH_CTF_DEF_AVG "micrograph.ctf.defocus_average" |
#define | MICROGRAPH_CTF_DEF_DEV "micrograph.ctf.defocus_deviation" |
#define | MICROGRAPH_CTF_DEF_MIN "micrograph.ctf.defocus_min" |
#define | MICROGRAPH_CTF_DEF_MAX "micrograph.ctf.defocus_max" |
#define | MICROGRAPH_CTF_AST_ANG "micrograph.ctf.astigmatism_angle" |
#define | MICROGRAPH_CTF_BASELINE "micrograph.ctf.baseline" |
#define | MICROGRAPH_CTF_ENVELOPE "micrograph.ctf.envelope" |
#define | MICROGRAPH_BOX_RADIUS "micrograph.box_radius" |
#define | MICROGRAPH_BOX_RADIUS_X "micrograph.box_radius_x" |
#define | MICROGRAPH_BOX_RADIUS_Y "micrograph.box_radius_y" |
#define | MICROGRAPH_BOX_RADIUS_Z "micrograph.box_radius_z" |
#define | MICROGRAPH_BAD "micrograph.bad" |
#define | MICROGRAPH_BAD_RADIUS "micrograph.bad_radius" |
#define | MICROGRAPH_BAD_X "micrograph.bad_x" |
#define | MICROGRAPH_BAD_Y "micrograph.bad_y" |
#define | MICROGRAPH_BAD_Z "micrograph.bad_z" |
#define | MICROGRAPH_MARKER_RADIUS "micrograph.marker_radius" |
#define | MICROGRAPH_MARKER_ID "micrograph.marker_id" |
#define | MICROGRAPH_MARKER_X "micrograph.marker_x" |
#define | MICROGRAPH_MARKER_Y "micrograph.marker_y" |
#define | MICROGRAPH_MARKER_Z "micrograph.marker_z" |
#define | MICROGRAPH_MARKER_ERROR_X "micrograph.marker_error_x" |
#define | MICROGRAPH_MARKER_ERROR_Y "micrograph.marker_error_y" |
#define | MICROGRAPH_MARKER_ERROR_Z "micrograph.marker_error_z" |
#define | MICROGRAPH_MARKER_FOM "micrograph.marker_fom" |
#define | MICROGRAPH_FILAMENT_WIDTH "micrograph.filament_width" |
#define | MICROGRAPH_FILNODE_RADIUS "micrograph.filament_node_radius" |
#define | CTF "ctf" |
#define | CTF_ID "ctf.id" |
#define | CTF_SELECT "ctf.select" |
#define | CTF_FOM "ctf.fom" |
#define | CTF_VOLTAGE "ctf.voltage" |
#define | CTF_FOCAL "ctf.focal_length" |
#define | CTF_APERTURE "ctf.objective_aperture" |
#define | CTF_CS "ctf.Cs" |
#define | CTF_CC "ctf.Cc" |
#define | CTF_TILT_X "ctf.beam_tilt_x" |
#define | CTF_TILT_Y "ctf.beam_tilt_y" |
#define | CTF_ABERRATION_ODD "ctf.aberration_odd" |
#define | CTF_ABERRATION_EVEN "ctf.aberration_even" |
#define | CTF_ALPHA "ctf.alpha" |
#define | CTF_DE "ctf.energy_spread" |
#define | CTF_AMP "ctf.amp_contrast" |
#define | CTF_AMP_SHIFT "ctf.amplitude_phase_shift" |
#define | CTF_ZERO "ctf.first_zero" |
#define | CTF_DEF_AVG "ctf.defocus_average" |
#define | CTF_DEF_DEV "ctf.defocus_deviation" |
#define | CTF_DEF_MIN "ctf.defocus_min" |
#define | CTF_DEF_MAX "ctf.defocus_max" |
#define | CTF_AST_ANG "ctf.astigmatism_angle" |
#define | CTF_BASELINE "ctf.baseline" |
#define | CTF_ENVELOPE "ctf.envelope" |
#define | PARTICLE "particle" |
#define | PARTICLE_FILE "particle.file_name" |
#define | PARTICLE_NUMBER "particle.number" |
#define | PARTICLE_ID "particle.id" |
#define | PARTICLE_GROUP "particle.group_id" |
#define | PARTICLE_MG_ID "particle.micrograph_id" |
#define | PARTICLE_MG_X "particle.micrograph_x" |
#define | PARTICLE_MG_Y "particle.micrograph_y" |
#define | PARTICLE_MG_Z "particle.micrograph_z" |
#define | PARTICLE_X "particle.x" |
#define | PARTICLE_Y "particle.y" |
#define | PARTICLE_Z "particle.z" |
#define | PARTICLE_X_ORIGIN "particle.x_origin" |
#define | PARTICLE_Y_ORIGIN "particle.y_origin" |
#define | PARTICLE_Z_ORIGIN "particle.z_origin" |
#define | PARTICLE_ORIGIN_X "particle.origin_x" |
#define | PARTICLE_ORIGIN_Y "particle.origin_y" |
#define | PARTICLE_ORIGIN_Z "particle.origin_z" |
#define | PARTICLE_PSI "particle.psi" |
#define | PARTICLE_THETA "particle.theta" |
#define | PARTICLE_PHI "particle.phi" |
#define | PARTICLE_OMEGA "particle.omega" |
#define | PARTICLE_VIEW_X "particle.view_x" |
#define | PARTICLE_VIEW_Y "particle.view_y" |
#define | PARTICLE_VIEW_Z "particle.view_z" |
#define | PARTICLE_VIEW_ANGLE "particle.view_angle" |
#define | PARTICLE_MAGNIF "particle.magnification" |
#define | PARTICLE_PIXEL "particle.pixel_size" |
#define | PARTICLE_PIXEL_X "particle.pixel_size_x" |
#define | PARTICLE_PIXEL_Y "particle.pixel_size_y" |
#define | PARTICLE_PIXEL_Z "particle.pixel_size_z" |
#define | PARTICLE_DEFOCUS "particle.defocus" |
#define | PARTICLE_DEF_DEV "particle.defocus_deviation" |
#define | PARTICLE_AST_ANG "particle.astigmatism_angle" |
#define | PARTICLE_SELECT "particle.select" |
#define | PARTICLE_FOM "particle.fom" |
#define | PARTICLE_FOM_CV "particle.fom_crossvalidation" |
#define | PARTICLE_FOM_SNR "particle.signal_to_noise" |
#define | PARTICLE_FOM_AVG "particle.fom_average" |
#define | PARTICLE_FOM_STD "particle.fom_stdev" |
#define | PARTICLE_FOM1 "particle.fom1" |
#define | PARTICLE_FOM2 "particle.fom2" |
#define | PARTICLE_FOM3 "particle.fom3" |
#define | PARTICLE_FOM4 "particle.fom4" |
#define | PARTICLE_FOM5 "particle.fom5" |
#define | PARTICLE_FOM6 "particle.fom6" |
#define | PARTICLE_FOM7 "particle.fom7" |
#define | PARTICLE_FOM8 "particle.fom8" |
#define | PARTICLE_FOM9 "particle.fom9" |
#define | PARTICLE_HANDA_FOM "particle.handa_fom" |
#define | PARTICLE_HANDB_FOM "particle.handb_fom" |
#define | PARTICLE_CC "particle.cc" |
#define | PARTICLE_CC_AVG "particle.cc_avg" |
#define | PARTICLE_PFT_CC "particle.pft_cc" |
#define | PARTICLE_PRJ_CC "particle.prj_cc" |
#define | PARTICLE_CMP_CC "particle.cmp_cc" |
#define | PARTICLE_RFACTORAB "particle.rfactorab" |
#define | PARTICLE_COVERAGE "particle.coverage" |
#define | PARTICLE_DENSITY "particle.density" |
#define | PARTICLE_BOX_SIZE "particle.box_size" |
#define | PARTICLE_BOX_SIZE_X "particle.box_size_x" |
#define | PARTICLE_BOX_SIZE_Y "particle.box_size_y" |
#define | PARTICLE_BOX_SIZE_Z "particle.box_size_z" |
#define | PARTICLE_BOX_RADIUS "particle.box_radius" |
#define | PARTICLE_BOX_RADIUS_X "particle.box_radius_x" |
#define | PARTICLE_BOX_RADIUS_Y "particle.box_radius_y" |
#define | PARTICLE_BOX_RADIUS_Z "particle.box_radius_z" |
#define | PARTICLE_BAD "particle.bad" |
#define | PARTICLE_BAD_RADIUS "particle.bad_radius" |
#define | PARTICLE_BAD_X "particle.bad_x" |
#define | PARTICLE_BAD_Y "particle.bad_y" |
#define | PARTICLE_BAD_Z "particle.bad_z" |
#define | CLASS_AVERAGE "class_average" |
#define | FILAMENT "filament" |
#define | FILAMENT_FILE "filament.file_name" |
#define | FILAMENT_ID "filament.id" |
#define | FILAMENT_NODE "filament.node" |
#define | FILAMENT_NODE_ID "filament.node_id" |
#define | FILAMENT_NODE_X "filament.x" |
#define | FILAMENT_NODE_Y "filament.y" |
#define | FILAMENT_NODE_Z "filament.z" |
#define | FILAMENT_WIDTH "filament.width" |
#define | FILNODE_RADIUS "filament.node_radius" |
#define | ORIENT_ID "orient.id" |
#define | ORIENT_ORIGIN_X "orient.origin_x" |
#define | ORIENT_ORIGIN_Y "orient.origin_y" |
#define | ORIENT_ORIGIN_Z "orient.origin_z" |
#define | ORIENT_VIEW_X "orient.view_x" |
#define | ORIENT_VIEW_Y "orient.view_y" |
#define | ORIENT_VIEW_Z "orient.view_z" |
#define | ORIENT_VIEW_ANGLE "orient.view_angle" |
#define | ORIENT_FOM "orient.fom" |
#define | ORIENT_SELECT "orient.select" |
#define | MARKER "marker" |
#define | MARKER_RADIUS "marker.radius" |
#define | MARKER_ID "marker.id" |
#define | MARKER_X "marker.x" |
#define | MARKER_Y "marker.y" |
#define | MARKER_Z "marker.z" |
#define | MARKER_ERROR_X "marker.error_x" |
#define | MARKER_ERROR_Y "marker.error_y" |
#define | MARKER_ERROR_Z "marker.error_z" |
#define | MARKER_IMAGE "marker.image_number" |
#define | MARKER_RESIDUAL "marker.residual" |
#define | MARKER_FOM "marker.fom" |
#define | MARKER_SELECT "marker.select" |
#define | REFLEX "refln" |
#define | REFLEX_RADIUS "refln.radius" |
#define | REFLEX_X "refln.location_x" |
#define | REFLEX_Y "refln.location_y" |
#define | REFLEX_Z "refln.location_z" |
#define | REFLEX_H "refln.index_h" |
#define | REFLEX_K "refln.index_k" |
#define | REFLEX_L "refln.index_l" |
#define | REFLEX_AMP "refln.F_meas_au" |
#define | REFLEX_SIGAMP "refln.F_meas_sigma_au" |
#define | REFLEX_PHI "refln.phase_meas" |
#define | REFLEX_SIGPHI "refln.phase_sigma" |
#define | REFLEX_FOM "refln.weight" |
#define | REFLEX_STATUS "refln.status" |
#define | LAYERLINE "layer_line" |
#define | LAYERLINE_NUMBER "layer_line.number" |
#define | LAYERLINE_ORDER "layer_line.bessel_order" |
#define | LAYERLINE_DISTANCE "layer_line.distance" |
#define | LAYERLINE_FREQ "layer_line.frequency" |
#define | LAYERLINE_AMP "layer_line.amplitude" |
#define | LAYERLINE_FOM "layer_line.fom" |
#define | LAYERLINE_SELECT "layer_line.select" |
All STAR and XML file format tags for micrographs and reconstructions.
#define CLASS_AVERAGE "class_average" |
#define COMMENT "comment" |
#define CTF "ctf" |
#define CTF_ABERRATION_EVEN "ctf.aberration_even" |
#define CTF_ABERRATION_ODD "ctf.aberration_odd" |
#define CTF_ALPHA "ctf.alpha" |
#define CTF_AMP "ctf.amp_contrast" |
#define CTF_AMP_SHIFT "ctf.amplitude_phase_shift" |
#define CTF_APERTURE "ctf.objective_aperture" |
#define CTF_AST_ANG "ctf.astigmatism_angle" |
#define CTF_BASELINE "ctf.baseline" |
#define CTF_CC "ctf.Cc" |
#define CTF_CS "ctf.Cs" |
#define CTF_DE "ctf.energy_spread" |
#define CTF_DEF_AVG "ctf.defocus_average" |
#define CTF_DEF_DEV "ctf.defocus_deviation" |
#define CTF_DEF_MAX "ctf.defocus_max" |
#define CTF_DEF_MIN "ctf.defocus_min" |
#define CTF_ENVELOPE "ctf.envelope" |
#define CTF_FOCAL "ctf.focal_length" |
#define CTF_FOM "ctf.fom" |
#define CTF_ID "ctf.id" |
#define CTF_SELECT "ctf.select" |
#define CTF_TILT_X "ctf.beam_tilt_x" |
#define CTF_TILT_Y "ctf.beam_tilt_y" |
#define CTF_VOLTAGE "ctf.voltage" |
#define CTF_ZERO "ctf.first_zero" |
#define FIELD "field" |
#define FIELD_FOM "field.fom" |
#define FIELD_ID "field.id" |
#define FIELD_SELECT "field.select" |
#define FILAMENT "filament" |
#define FILAMENT_FILE "filament.file_name" |
#define FILAMENT_ID "filament.id" |
#define FILAMENT_NODE "filament.node" |
#define FILAMENT_NODE_ID "filament.node_id" |
#define FILAMENT_NODE_X "filament.x" |
#define FILAMENT_NODE_Y "filament.y" |
#define FILAMENT_NODE_Z "filament.z" |
#define FILAMENT_WIDTH "filament.width" |
#define FILNODE_RADIUS "filament.node_radius" |
#define ID "id" |
#define LAYERLINE "layer_line" |
#define LAYERLINE_AMP "layer_line.amplitude" |
#define LAYERLINE_DISTANCE "layer_line.distance" |
#define LAYERLINE_FOM "layer_line.fom" |
#define LAYERLINE_FREQ "layer_line.frequency" |
#define LAYERLINE_NUMBER "layer_line.number" |
#define LAYERLINE_ORDER "layer_line.bessel_order" |
#define LAYERLINE_SELECT "layer_line.select" |
#define MAP "map.3D_reconstruction" |
#define MAP_BACK_RWEIGHT "map.back_projection.rweight" |
#define MAP_FOM "map.3D_reconstruction.fom" |
#define MAP_ID "map.3D_reconstruction.id" |
#define MAP_MAGNIFICATION "map.magnification" |
#define MAP_MODEL "map.model" |
#define MAP_ORIGIN_X "map.3D_reconstruction.origin_x" |
#define MAP_ORIGIN_Y "map.3D_reconstruction.origin_y" |
#define MAP_ORIGIN_Z "map.3D_reconstruction.origin_z" |
#define MAP_POWERSPEC_FILE "map.3D_reconstruction_powerspectrum.file_name" |
#define MAP_RECONSTRUCTION "map.3D_reconstruction.file_name" |
#define MAP_REFERENCE "map.reference.file_name" |
#define MAP_SCALE_X "map.3D_reconstruction.scale_x" |
#define MAP_SCALE_Y "map.3D_reconstruction.scale_y" |
#define MAP_SCALE_Z "map.3D_reconstruction.scale_z" |
#define MAP_SELECT "map.3D_reconstruction.select" |
#define MAP_SIZE_X "map.3D_reconstruction.size_x" |
#define MAP_SIZE_Y "map.3D_reconstruction.size_y" |
#define MAP_SIZE_Z "map.3D_reconstruction.size_z" |
#define MAP_SYMMETRY "map.symmetry" |
#define MAP_TRANSFORM_FILE "map.3D_reconstruction_fourier_transform.file_name" |
#define MAP_VIEW_ANGLE "map.view_angle" |
#define MAP_VIEW_X "map.view_x" |
#define MAP_VIEW_Y "map.view_y" |
#define MAP_VIEW_Z "map.view_z" |
#define MAP_VOXEL_SIZE "map.3D_reconstruction.voxel_size" |
#define MAP_VOXEL_SIZE_X "map.3D_reconstruction.voxel_size_x" |
#define MAP_VOXEL_SIZE_Y "map.3D_reconstruction.voxel_size_y" |
#define MAP_VOXEL_SIZE_Z "map.3D_reconstruction.voxel_size_z" |
#define MARKER "marker" |
#define MARKER_ERROR_X "marker.error_x" |
#define MARKER_ERROR_Y "marker.error_y" |
#define MARKER_ERROR_Z "marker.error_z" |
#define MARKER_FOM "marker.fom" |
#define MARKER_ID "marker.id" |
#define MARKER_IMAGE "marker.image_number" |
#define MARKER_RADIUS "marker.radius" |
#define MARKER_RESIDUAL "marker.residual" |
#define MARKER_SELECT "marker.select" |
#define MARKER_X "marker.x" |
#define MARKER_Y "marker.y" |
#define MARKER_Z "marker.z" |
#define MICROGRAPH "micrograph" |
#define MICROGRAPH_BAD "micrograph.bad" |
#define MICROGRAPH_BAD_RADIUS "micrograph.bad_radius" |
#define MICROGRAPH_BAD_X "micrograph.bad_x" |
#define MICROGRAPH_BAD_Y "micrograph.bad_y" |
#define MICROGRAPH_BAD_Z "micrograph.bad_z" |
#define MICROGRAPH_BOX_RADIUS "micrograph.box_radius" |
#define MICROGRAPH_BOX_RADIUS_X "micrograph.box_radius_x" |
#define MICROGRAPH_BOX_RADIUS_Y "micrograph.box_radius_y" |
#define MICROGRAPH_BOX_RADIUS_Z "micrograph.box_radius_z" |
#define MICROGRAPH_CTF_ALPHA "micrograph.ctf.alpha" |
#define MICROGRAPH_CTF_AMP_CONT "micrograph.ctf.amp_contrast" |
#define MICROGRAPH_CTF_AST_ANG "micrograph.ctf.astigmatism_angle" |
#define MICROGRAPH_CTF_BASELINE "micrograph.ctf.baseline" |
#define MICROGRAPH_CTF_CC "micrograph.ctf.Cc" |
#define MICROGRAPH_CTF_CS "micrograph.ctf.Cs" |
#define MICROGRAPH_CTF_DE "micrograph.ctf.energy_spread" |
#define MICROGRAPH_CTF_DEF_AVG "micrograph.ctf.defocus_average" |
#define MICROGRAPH_CTF_DEF_DEV "micrograph.ctf.defocus_deviation" |
#define MICROGRAPH_CTF_DEF_MAX "micrograph.ctf.defocus_max" |
#define MICROGRAPH_CTF_DEF_MIN "micrograph.ctf.defocus_min" |
#define MICROGRAPH_CTF_ENVELOPE "micrograph.ctf.envelope" |
#define MICROGRAPH_CTF_ZERO "micrograph.ctf.first_zero" |
#define MICROGRAPH_DOSE "micrograph.electron_dose" |
#define MICROGRAPH_EXPOSURE "micrograph.exposure" |
#define MICROGRAPH_FIELD_ID "micrograph.field_id" |
#define MICROGRAPH_FILAMENT_FILE "micrograph_filament.file_name" |
#define MICROGRAPH_FILAMENT_WIDTH "micrograph.filament_width" |
#define MICROGRAPH_FILE "micrograph.file_name" |
#define MICROGRAPH_FILNODE_RADIUS "micrograph.filament_node_radius" |
#define MICROGRAPH_FOM "micrograph.fom" |
#define MICROGRAPH_FRAME "micrograph_frame.number" |
#define MICROGRAPH_FRAME_FOM "micrograph_frame.fom" |
#define MICROGRAPH_FRAME_PIXEL_X "micrograph_frame.pixel_size_x" |
#define MICROGRAPH_FRAME_PIXEL_Y "micrograph_frame.pixel_size_y" |
#define MICROGRAPH_FRAME_PIXEL_Z "micrograph_frame.pixel_size_z" |
#define MICROGRAPH_FRAME_SELECT "micrograph_frame.select" |
#define MICROGRAPH_FRAME_SHIFT_X "micrograph_frame.shift_x" |
#define MICROGRAPH_FRAME_SHIFT_Y "micrograph_frame.shift_y" |
#define MICROGRAPH_FRAMES_FILE "micrograph_frames.file_name" |
#define MICROGRAPH_HELIX_ANGLE "micrograph.helix_subunit_angle" |
#define MICROGRAPH_HELIX_AXIS "micrograph.helix_axis_angle" |
#define MICROGRAPH_HELIX_RADIUS "micrograph.helix_radius" |
#define MICROGRAPH_HELIX_RISE "micrograph.helix_subunit_rise" |
#define MICROGRAPH_HVEC_X "micrograph.h_x" |
#define MICROGRAPH_HVEC_Y "micrograph.h_y" |
#define MICROGRAPH_HVEC_Z "micrograph.h_z" |
#define MICROGRAPH_ID "micrograph.id" |
#define MICROGRAPH_INTENSITY "micrograph.intensity" |
#define MICROGRAPH_KVEC_X "micrograph.k_x" |
#define MICROGRAPH_KVEC_Y "micrograph.k_y" |
#define MICROGRAPH_KVEC_Z "micrograph.k_z" |
#define MICROGRAPH_LEVEL_ANGLE "micrograph.level_angle" |
#define MICROGRAPH_LVEC_X "micrograph.l_x" |
#define MICROGRAPH_LVEC_Y "micrograph.l_y" |
#define MICROGRAPH_LVEC_Z "micrograph.l_z" |
#define MICROGRAPH_MAGNIFICATION "micrograph.magnification" |
#define MICROGRAPH_MARKER_ERROR_X "micrograph.marker_error_x" |
#define MICROGRAPH_MARKER_ERROR_Y "micrograph.marker_error_y" |
#define MICROGRAPH_MARKER_ERROR_Z "micrograph.marker_error_z" |
#define MICROGRAPH_MARKER_FOM "micrograph.marker_fom" |
#define MICROGRAPH_MARKER_ID "micrograph.marker_id" |
#define MICROGRAPH_MARKER_RADIUS "micrograph.marker_radius" |
#define MICROGRAPH_MARKER_X "micrograph.marker_x" |
#define MICROGRAPH_MARKER_Y "micrograph.marker_y" |
#define MICROGRAPH_MARKER_Z "micrograph.marker_z" |
#define MICROGRAPH_MATRIX_1_1 "micrograph.matrix_1_1" |
#define MICROGRAPH_MATRIX_1_2 "micrograph.matrix_1_2" |
#define MICROGRAPH_MATRIX_1_3 "micrograph.matrix_1_3" |
#define MICROGRAPH_MATRIX_2_1 "micrograph.matrix_2_1" |
#define MICROGRAPH_MATRIX_2_2 "micrograph.matrix_2_2" |
#define MICROGRAPH_MATRIX_2_3 "micrograph.matrix_2_3" |
#define MICROGRAPH_MATRIX_3_1 "micrograph.matrix_3_1" |
#define MICROGRAPH_MATRIX_3_2 "micrograph.matrix_3_2" |
#define MICROGRAPH_MATRIX_3_3 "micrograph.matrix_3_3" |
#define MICROGRAPH_NUMBER "micrograph.number" |
#define MICROGRAPH_ORIGIN_X "micrograph.origin_x" |
#define MICROGRAPH_ORIGIN_Y "micrograph.origin_y" |
#define MICROGRAPH_ORIGIN_Z "micrograph.origin_z" |
#define MICROGRAPH_PARTICLE_FILE "micrograph_particle.file_name" |
#define MICROGRAPH_PIXEL "micrograph.pixel_size" |
#define MICROGRAPH_PIXEL_X "micrograph.pixel_size_x" |
#define MICROGRAPH_PIXEL_Y "micrograph.pixel_size_y" |
#define MICROGRAPH_PIXEL_Z "micrograph.pixel_size_z" |
#define MICROGRAPH_POWERSPEC_FILE "micrograph_powerspectrum.file_name" |
#define MICROGRAPH_ROT_ANGLE "micrograph.rotation_angle" |
#define MICROGRAPH_SAMPLING "micrograph.sampling" |
#define MICROGRAPH_SCALE_X "micrograph.scale_x" |
#define MICROGRAPH_SCALE_Y "micrograph.scale_y" |
#define MICROGRAPH_SCALE_Z "micrograph.scale_z" |
#define MICROGRAPH_SELECT "micrograph.select" |
#define MICROGRAPH_TILT_ANGLE "micrograph.tilt_angle" |
#define MICROGRAPH_TILT_AXIS "micrograph.tilt_axis" |
#define MICROGRAPH_TRANSFORM_FILE "micrograph_fourier_transform.file_name" |
#define MICROGRAPH_UNITS "micrograph.units" |
#define MICROGRAPH_VIEW_ANGLE "micrograph.view_angle" |
#define MICROGRAPH_VIEW_X "micrograph.view_x" |
#define MICROGRAPH_VIEW_Y "micrograph.view_y" |
#define MICROGRAPH_VIEW_Z "micrograph.view_z" |
#define MICROGRAPH_VOLTAGE "micrograph.voltage" |
#define MICROGRAPH_WATER_RING "micrograph.water_ring_index" |
#define ORIENT_FOM "orient.fom" |
#define ORIENT_ID "orient.id" |
#define ORIENT_ORIGIN_X "orient.origin_x" |
#define ORIENT_ORIGIN_Y "orient.origin_y" |
#define ORIENT_ORIGIN_Z "orient.origin_z" |
#define ORIENT_SELECT "orient.select" |
#define ORIENT_VIEW_ANGLE "orient.view_angle" |
#define ORIENT_VIEW_X "orient.view_x" |
#define ORIENT_VIEW_Y "orient.view_y" |
#define ORIENT_VIEW_Z "orient.view_z" |
#define PARTICLE "particle" |
#define PARTICLE_AST_ANG "particle.astigmatism_angle" |
#define PARTICLE_BAD "particle.bad" |
#define PARTICLE_BAD_RADIUS "particle.bad_radius" |
#define PARTICLE_BAD_X "particle.bad_x" |
#define PARTICLE_BAD_Y "particle.bad_y" |
#define PARTICLE_BAD_Z "particle.bad_z" |
#define PARTICLE_BOX_RADIUS "particle.box_radius" |
#define PARTICLE_BOX_RADIUS_X "particle.box_radius_x" |
#define PARTICLE_BOX_RADIUS_Y "particle.box_radius_y" |
#define PARTICLE_BOX_RADIUS_Z "particle.box_radius_z" |
#define PARTICLE_BOX_SIZE "particle.box_size" |
#define PARTICLE_BOX_SIZE_X "particle.box_size_x" |
#define PARTICLE_BOX_SIZE_Y "particle.box_size_y" |
#define PARTICLE_BOX_SIZE_Z "particle.box_size_z" |
#define PARTICLE_CC "particle.cc" |
#define PARTICLE_CC_AVG "particle.cc_avg" |
#define PARTICLE_CMP_CC "particle.cmp_cc" |
#define PARTICLE_COVERAGE "particle.coverage" |
#define PARTICLE_DEF_DEV "particle.defocus_deviation" |
#define PARTICLE_DEFOCUS "particle.defocus" |
#define PARTICLE_DENSITY "particle.density" |
#define PARTICLE_FILE "particle.file_name" |
#define PARTICLE_FOM "particle.fom" |
#define PARTICLE_FOM1 "particle.fom1" |
#define PARTICLE_FOM2 "particle.fom2" |
#define PARTICLE_FOM3 "particle.fom3" |
#define PARTICLE_FOM4 "particle.fom4" |
#define PARTICLE_FOM5 "particle.fom5" |
#define PARTICLE_FOM6 "particle.fom6" |
#define PARTICLE_FOM7 "particle.fom7" |
#define PARTICLE_FOM8 "particle.fom8" |
#define PARTICLE_FOM9 "particle.fom9" |
#define PARTICLE_FOM_AVG "particle.fom_average" |
#define PARTICLE_FOM_CV "particle.fom_crossvalidation" |
#define PARTICLE_FOM_SNR "particle.signal_to_noise" |
#define PARTICLE_FOM_STD "particle.fom_stdev" |
#define PARTICLE_GROUP "particle.group_id" |
#define PARTICLE_HANDA_FOM "particle.handa_fom" |
#define PARTICLE_HANDB_FOM "particle.handb_fom" |
#define PARTICLE_ID "particle.id" |
#define PARTICLE_MAGNIF "particle.magnification" |
#define PARTICLE_MG_ID "particle.micrograph_id" |
#define PARTICLE_MG_X "particle.micrograph_x" |
#define PARTICLE_MG_Y "particle.micrograph_y" |
#define PARTICLE_MG_Z "particle.micrograph_z" |
#define PARTICLE_NUMBER "particle.number" |
#define PARTICLE_OMEGA "particle.omega" |
#define PARTICLE_ORIGIN_X "particle.origin_x" |
#define PARTICLE_ORIGIN_Y "particle.origin_y" |
#define PARTICLE_ORIGIN_Z "particle.origin_z" |
#define PARTICLE_PFT_CC "particle.pft_cc" |
#define PARTICLE_PHI "particle.phi" |
#define PARTICLE_PIXEL "particle.pixel_size" |
#define PARTICLE_PIXEL_X "particle.pixel_size_x" |
#define PARTICLE_PIXEL_Y "particle.pixel_size_y" |
#define PARTICLE_PIXEL_Z "particle.pixel_size_z" |
#define PARTICLE_PRJ_CC "particle.prj_cc" |
#define PARTICLE_PSI "particle.psi" |
#define PARTICLE_RFACTORAB "particle.rfactorab" |
#define PARTICLE_SELECT "particle.select" |
#define PARTICLE_THETA "particle.theta" |
#define PARTICLE_VIEW_ANGLE "particle.view_angle" |
#define PARTICLE_VIEW_X "particle.view_x" |
#define PARTICLE_VIEW_Y "particle.view_y" |
#define PARTICLE_VIEW_Z "particle.view_z" |
#define PARTICLE_X "particle.x" |
#define PARTICLE_X_ORIGIN "particle.x_origin" |
#define PARTICLE_Y "particle.y" |
#define PARTICLE_Y_ORIGIN "particle.y_origin" |
#define PARTICLE_Z "particle.z" |
#define PARTICLE_Z_ORIGIN "particle.z_origin" |
#define PROJECT "project" |
#define REFLEX "refln" |
#define REFLEX_AMP "refln.F_meas_au" |
#define REFLEX_FOM "refln.weight" |
#define REFLEX_H "refln.index_h" |
#define REFLEX_K "refln.index_k" |
#define REFLEX_L "refln.index_l" |
#define REFLEX_PHI "refln.phase_meas" |
#define REFLEX_RADIUS "refln.radius" |
#define REFLEX_SIGAMP "refln.F_meas_sigma_au" |
#define REFLEX_SIGPHI "refln.phase_sigma" |
#define REFLEX_STATUS "refln.status" |
#define REFLEX_X "refln.location_x" |
#define REFLEX_Y "refln.location_y" |
#define REFLEX_Z "refln.location_z" |