ps_micrograph.cpp File Reference

Postscript output for micrographs. More...

#include "ps_micrograph.h"
#include "ps_plot.h"
#include "ps_views.h"
#include "rwimg.h"
#include "symmetry.h"
#include "linked_list.h"
#include "utilities.h"

Functions
int	ps_origins (ofstream *fps, Bstring &title, Bproject *project, int flags)
int	ps_mg_origins (Bstring &filename, Bstring &title, Bproject *project)
	Postscript plot of the micrograph origins. More...
int	ps_mg_particle_positions (Bstring &filename, Bstring &title, Bproject *project)
	Postscript plot of the positions of particles on micrographs. More...
int	ps_particle_views_origins (Bstring &filename, Bstring &title, Bstring &symmetry_string, Bproject *project, int selection)
	Generates asymmetric unit particle view and origin postscript plots. More...
int	ps_particle_phi_theta (Bstring &filename, Bstring &title, Bproject *project, int selection)
	Generates phi-theta views postscript plots. More...
int	ps_origins (Bstring &filename, Bstring &title, Bproject *project, int flags)
	Generates postscript plot of origins on a square with the size of the box. More...
int	ps_part_fom_histogram (Bstring &filename, Bproject *project)
	Postscript plot of the particle FOM histogram. More...
int	ps_defocus_histogram (Bstring &filename, Bproject *project)
	Postscript histogram plot of micrograph defocus parameters. More...
int	ps_astigmatism_plot (Bstring &filename, Bproject *project)
	Postscript plot of micrograph astigmatism parameters. More...
int	ps_class_average_fom (ofstream *fps, Bproject *project)
	Postscript histogram plot of class average FOM's. More...

Variables
int	verbose

Detailed Description

Postscript output for micrographs.

Author

Bernard Heymann

Date

Created: 20011127

Modified: 20210706

Function Documentation

ps_astigmatism_plot()

int ps_astigmatism_plot	(	Bstring &	filename,
		Bproject *	project
	)

Postscript plot of micrograph astigmatism parameters.

Parameters

&filename	output postscript file name.
*project	project parameter structure.

Returns

int 0, error if <0.

ps_class_average_fom()

int ps_class_average_fom	(	ofstream *	fps,
		Bproject *	project
	)

Postscript histogram plot of class average FOM's.

Parameters

*fps	output stream.
*project	project parameter structure.

Returns

int 0, error if <0.

ps_defocus_histogram()

int ps_defocus_histogram	(	Bstring &	filename,
		Bproject *	project
	)

Postscript histogram plot of micrograph defocus parameters.

Parameters

&filename	output postscript file name.
*project	project parameter structure.

Returns

int 0, error if <0.

ps_mg_origins()

int ps_mg_origins	(	Bstring &	filename,
		Bstring &	title,
		Bproject *	project
	)

Postscript plot of the micrograph origins.

Parameters

&filename	output postscript file name.
&title	title.
*project	project parameter structure.

Returns

int 0, error if <0.

ps_mg_particle_positions()

int ps_mg_particle_positions	(	Bstring &	filename,
		Bstring &	title,
		Bproject *	project
	)

Postscript plot of the positions of particles on micrographs.

Parameters

&filename	output postscript file name.
&title	title.
*project	project parameter structure.

Returns

int 0, error if <0.

ps_origins() [1/2]

int ps_origins	(	Bstring &	filename,
		Bstring &	title,
		Bproject *	project,
		int	flags
	)

Generates postscript plot of origins on a square with the size of the box.

Author

Eduardo Sanz-Garcia and Bernard Heymann

Parameters

&filename	output postscript file name.
&title	title.
*project	micrograph particle parameter structure.
flags	flags.

Returns

int 0, error if <0.

The plotting options are determined by the flags argument:
    0 = plot origins
    1 = plot numbered origins
    2 = plot origins with shading according to occurrence.
        The gray level indicates the ratio to the maximum occurrence.

ps_origins() [2/2]

int ps_origins	(	ofstream *	fps,
		Bstring &	title,
		Bproject *	project,
		int	flags
	)

ps_part_fom_histogram()

int ps_part_fom_histogram	(	Bstring &	filename,
		Bproject *	project
	)

Postscript plot of the particle FOM histogram.

Parameters

&filename	output postscript file name.
*project	project parameter structure.

Returns

int 0, error if <0.

ps_particle_phi_theta()

int ps_particle_phi_theta	(	Bstring &	filename,
		Bstring &	title,
		Bproject *	project,
		int	selection
	)

Generates phi-theta views postscript plots.

Parameters

&filename	output postscript file name.
&title	title.
*project	parameter structure.
selection	selection number (-1 selects positives, 0 selects all).

Returns

int number of view panels.

ps_particle_views_origins()

int ps_particle_views_origins	(	Bstring &	filename,
		Bstring &	title,
		Bstring &	symmetry_string,
		Bproject *	project,
		int	selection
	)

Generates asymmetric unit particle view and origin postscript plots.

Parameters

&filename	output postscript file name.
&title	title.
&symmetry_string	symmetry string to print at the top of the page.
*project	parameter structure.
selection	selection number (-1 selects positives, 0 selects all).

Returns

int number of view panels.

Variable Documentation

verbose

int verbose

extern