ps_sequence.cpp File Reference

Postscript output for sequence analysis functions. More...

#include "ps_plot.h"
#include "Complex.h"
#include "utilities.h"

Functions
int	ps_seq_representation (ofstream *fps, vector< double > &nseq)
int	ps_seq_periodicity (ofstream *fps, vector< Complex< float > > &per)
int	ps_seq_info (Bstring &filename, Bstring &title, int nres, vector< double > &info, vector< double > &nseq, vector< Complex< float > > &per, vector< double > &freq, string &pattern)
	Generates a postscript plot from an information content analysis of a protein sequence alignment. More...
int	ps_seq_hydrophob (Bstring &filename, Bstring &title, vector< double > &Hphob, vector< int > &HPseg, vector< double > &nseq, vector< Complex< float > > &per)
	Generates a postscript plot from a hydrophobicity analysis of a protein sequence alignment. More...

Variables
int	verbose

Detailed Description

Postscript output for sequence analysis functions.

Author

Bernard Heymann

Date

Created: 20010515

Modified: 20210426

Function Documentation

ps_seq_hydrophob()

int ps_seq_hydrophob	(	Bstring &	filename,
		Bstring &	title,
		vector< double > &	Hphob,
		vector< int > &	HPseg,
		vector< double > &	nseq,
		vector< Complex< float > > &	per
	)

Generates a postscript plot from a hydrophobicity analysis of a protein sequence alignment.

Parameters

&filename	postscript file name.
&title	title.
*Hphob	moving average of average hydrophobicity at each position.
*HPseg	assignment of hydrophobic segments.
*nseq	number of sequences represented at each position.
*per	periodicity analysis.

Returns

int 0.

ps_seq_info()

int ps_seq_info	(	Bstring &	filename,
		Bstring &	title,
		int	nres,
		vector< double > &	info,
		vector< double > &	nseq,
		vector< Complex< float > > &	per,
		vector< double > &	freq,
		string &	pattern
	)

Generates a postscript plot from an information content analysis of a protein sequence alignment.

Parameters

&filename	postscript file name.
&title	title.
nres	number of residue types.
&info	moving average of information content.
&nseq	number of sequences represented at each position.
&per	periodicity analysis.
&freq	frequence of each residue type at each position.
&pattern	residue types at each position, in frequency order.

Returns

int 0.

ps_seq_periodicity()

int ps_seq_periodicity	(	ofstream *	fps,
		vector< Complex< float > > &	per
	)

ps_seq_representation()

int ps_seq_representation	(	ofstream *	fps,
		vector< double > &	nseq
	)

Variable Documentation

verbose

int verbose

extern