rwClustal.cpp File Reference

Library routines to read and write Clustal sequence files. More...

#include "rwClustal.h"
#include "utilities.h"
#include <fstream>
#include <sstream>

Functions
int	readClustal (Bstring &filename, Bmolgroup *molgroup)
	Reads Clustal format sequence files. More...
int	writeClustal (Bstring &filename, Bmolgroup *molgroup)
	Writes Clustal format sequence files. More...

Variables
int	verbose

Detailed Description

Library routines to read and write Clustal sequence files.

Author

Bernard Heymann

Date

Created: 20030309

Modified: 20210422

Function Documentation

readClustal()

int readClustal	(	Bstring &	filename,
		Bmolgroup *	molgroup
	)

Reads Clustal format sequence files.

Parameters

&filename	sequence file name.
*molgroup	molecule group.

Returns

int number of molecules read (<0 if reading failed).

Clustal format:

NP_039940       -----MHAKMNGWAGVRL--VTHCLNTRSRTYVALNMLAFARTPRGVPSCLFNKVWVSRY
P16720          -----MHAKMNGWAGVRL--VTHCLNTRSRTYVALNMLAFARTPRGVPSCLFNKVWVSRY
DAA00163        -----MHAKMNGWAGVRL--VTHCLNTRSRTYVALNMLAFARTPRGVPSCLFNKVWVSRY

writeClustal()

int writeClustal	(	Bstring &	filename,
		Bmolgroup *	molgroup
	)

Writes Clustal format sequence files.

Parameters

&filename	sequence file name.
*molgroup	molecule group.

Returns

int number of molecules written (<0 if writing failed).

Variable Documentation

verbose

int verbose

extern