rwEMBL.cpp File Reference

Library routines to read and write EMBL sequence files. More...

#include "rwEMBL.h"
#include "utilities.h"
#include <fstream>

Functions
int	readEMBL (Bstring &filename, Bmolgroup *molgroup)
	Reads EMBL format sequence files. More...
int	writeEMBL (Bstring &filename, Bmolgroup *molgroup)
	Writes EMBL format sequence files. More...

Variables
int	verbose

Detailed Description

Library routines to read and write EMBL sequence files.

Author

Bernard Heymann

Date

Created: 19990123

Modified: 20210422

Function Documentation

readEMBL()

int readEMBL	(	Bstring &	filename,
		Bmolgroup *	molgroup
	)

Reads EMBL format sequence files.

Parameters

&filename	sequence file name.
*molgroup	molecule group.

Returns

int number of molecules read (<0 if reading failed).

EMBL format:
ID   AQP1_HUMAN
DE   AQP1_HUMAN, 527 bases, EB1B8D0 checksum.
SQ             527 BP
    ---------- ---------- ---------- ---------- ---------- ----MASEFK

writeEMBL()

int writeEMBL	(	Bstring &	filename,
		Bmolgroup *	molgroup
	)

Writes EMBL format sequence files.

Parameters

&filename	sequence file name.
*molgroup	molecule group.

Returns

int number of molecules written (<0 if writing failed).

Variable Documentation

verbose

int verbose

extern