Library routines to read and write GenBank sequence files. More...

#include "rwGenBank.h"
#include "string_util.h"
#include "utilities.h"
#include <fstream>

Functions
int	readGenBank (Bstring &filename, Bmolgroup *molgroup)
	Reads GenBank format sequence files. More...

int	writeGenBank (Bstring &filename, Bmolgroup *molgroup)
	Writes GenBank format sequence files. More...

Variables
int	verbose

Detailed Description

Library routines to read and write GenBank sequence files.

Author: Bernard Heymann

Date: Created: 20030308; Modified: 20210423

Function Documentation

◆ readGenBank()

int readGenBank	(	Bstring &	filename,
		Bmolgroup *	molgroup
	)

Reads GenBank format sequence files.

Parameters

&filename	sequence file name.
*molgroup	molecule group.

Returns

int number of molecules read (<0 if reading failed).

GenBank format:
LOCUS       NP_039940                284 aa            linear   VRL 13-FEB-2003
DEFINITION  UL6 [Human herpesvirus 5].
ACCESSION   NP_039940
ORIGIN      
        1 mhakmngwag vrlvthclnt rsrtyvalnm lafartprgv psclfnkvwv sryalvlilm
       61 vcasesstsw avtsnrlpnc stitttagqd aelhgpapls cnvtqwgrye ngstpvlwct
      121 lwgsrtrvsl ghrvafgcsw ktffiynvse ssggty

◆ writeGenBank()

int writeGenBank	(	Bstring &	filename,
		Bmolgroup *	molgroup
	)

Writes GenBank format sequence files.

Parameters

&filename	sequence file name.
*molgroup	molecule group.

Returns: int number of molecules written (<0 if writing failed).

Variable Documentation

◆ verbose

int verbose

extern