rwPIR.cpp File Reference

Library routines to read and write PIR sequence files. More...

#include "rwPIR.h"
#include "utilities.h"
#include <fstream>

Functions
int	readPIR (Bstring &filename, Bmolgroup *molgroup)
	Reads PIR format sequence files. More...
int	writePIR (Bstring &filename, Bmolgroup *molgroup)
	Writes PIR format sequence files. More...

Variables
int	verbose

Detailed Description

Library routines to read and write PIR sequence files.

Author

Bernard Heymann

Date

Created: 19990123

Modified: 20210423

Function Documentation

readPIR()

int readPIR	(	Bstring &	filename,
		Bmolgroup *	molgroup
	)

Reads PIR format sequence files.

Parameters

&filename	sequence file name.
*molgroup	molecule group.

Returns

int number of molecules read (<0 if reading failed).

PIR format:
>P1;BAC1_HALS1
BAC1_HALS1, 308 bases, DC74A5E6 checksum.
 -------— —MDPIALT AAVGADLLGD GRPETLWLGI GTLLMLIGTF
 ASAAD—*

writePIR()

int writePIR	(	Bstring &	filename,
		Bmolgroup *	molgroup
	)

Writes PIR format sequence files.

Parameters

&filename	sequence file name.
*molgroup	molecule group.

Returns

int number of molecules written (<0 if writing failed).

Variable Documentation

verbose

int verbose

extern