rwgencode.cpp File Reference

Library routines to read and write genetic codes. More...

#include "rwgencode.h"
#include "star.h"
#include "mol_tags.h"
#include "utilities.h"

Functions
Bstring	read_gencode_star (Bstring &propfile)
Bstring	get_genetic_code (Bstring &filename)
	Gets the genetic code from a parameter file. More...
int	write_genetic_code (Bstring &filename, Bstring &gc)
	Writing genetic code. More...
int	index_from_codon (const char codon[3])
	Gets the index associated with a specific codon. More...

Variables
int	verbose

Detailed Description

Library routines to read and write genetic codes.

Author

Bernard Heymann

Date

Created: 20030316

Modified: 20210328

Function Documentation

get_genetic_code()

Bstring get_genetic_code

(

Bstring &

filename

)

Gets the genetic code from a parameter file.

Parameters

&filename

file name (if empty, use a default file).

Returns

Bstring 64 character array of residues (+1 0 termination character).

index_from_codon()

int index_from_codon

(

const char

codon[3]

)

Gets the index associated with a specific codon.

Parameters

*codon

the codon.

Returns

int index.

read_gencode_star()

Bstring read_gencode_star

(

Bstring &

propfile

)

write_genetic_code()

int write_genetic_code	(	Bstring &	filename,
		Bstring &	gc
	)

Writing genetic code.

Parameters

&filename	file name.
&gc	64-byte string with the genetic code.

Returns

int 0.

Variable Documentation

verbose

int verbose

extern