tcltk_bmarker.cpp File Reference

A shared object to manage markers in micrograph parameter files in TCL/Tk. More...

#include <tk.h>
#include "tcltk_bmarker.h"
#include "mg_img_proc.h"
#include "mg_extract.h"
#include "mg_tomography.h"
#include "mg_tomo_track.h"
#include "rwmg.h"
#include "linked_list.h"
#include "timer.h"
#include "utilities.h"
#include <sys/stat.h>

Functions
Tcl_Obj *	marker_count (Bproject *project)
Tcl_Obj *	marker_count (Bfield *field)
Tcl_Obj *	marker_count (Bmicrograph *mg)
Tcl_Obj *	marker_count (Breconstruction *rec)
Tcl_Obj *	marker_ids (Bproject *project, double fom_cut)
Tcl_Obj *	marker_ids (Bfield *field, double fom_cut)
Tcl_Obj *	marker_ids (Bmicrograph *mg, double fom_cut)
Tcl_Obj *	marker_ids (Breconstruction *rec, double fom_cut)
Tcl_Obj *	marker_list (Bproject *project)
Tcl_Obj *	marker_list (Bfield *field)
Tcl_Obj *	marker_list (Bmicrograph *mg)
Tcl_Obj *	marker_list (Breconstruction *rec)
Tcl_Obj *	marker_location (Bmarker *mark)
Tcl_Obj *	marker_residual (Bproject *project)
Tcl_Obj *	marker_residual (Bmarker *mark)
Tcl_Obj *	marker_fom (Bmarker *mark)
Tcl_Obj *	marker_fom_maximum (Bmarker *mark)
Tcl_Obj *	marker_select (Bmarker *marklist, double rad, int objc, Tcl_Obj *CONST objv[])
Tcl_Obj *	marker_select_rectangle (Bmarker *marklist, int objc, Tcl_Obj *CONST objv[])
Tcl_Obj *	marker_get_selection_flag (Bmarker *marklist, int objc, Tcl_Obj *CONST objv[])
Tcl_Obj *	marker_set_selection_flag (Bmarker *marklist, int objc, Tcl_Obj *CONST objv[])
Tcl_Obj *	marker_clear_selection_flag (Bmarker *marklist, int objc, Tcl_Obj *CONST objv[])
Tcl_Obj *	marker_move (Bmarker *marklist, int objc, Tcl_Obj *CONST objv[])
Tcl_Obj *	marker_create (Bmicrograph *mg, int objc, Tcl_Obj *CONST objv[])
Tcl_Obj *	marker_create (Breconstruction *rec, int objc, Tcl_Obj *CONST objv[])
Tcl_Obj *	marker_center (Bmarker *mark, Bimage *p, int objc, Tcl_Obj *CONST objv[])
Tcl_Obj *	marker_generate_from_seed (Bproject *project)
Tcl_Obj *	marker_find (Bmicrograph *mg, Bimage *p, int objc, Tcl_Obj *CONST objv[])
Tcl_Obj *	marker_snap (Bmicrograph *mg, Bimage *p, long mid, int objc, Tcl_Obj *CONST objv[])
Tcl_Obj *	marker_extract (Bmicrograph *mg, Bimage *p, int objc, Tcl_Obj *CONST objv[])
Tcl_Obj *	marker_extract (Breconstruction *rec, Bimage *p, int objc, Tcl_Obj *CONST objv[])
Tcl_Obj *	marker_delete (Bproject *project, int objc, Tcl_Obj *CONST objv[])
Tcl_Obj *	marker_delete (Bfield *field, int objc, Tcl_Obj *CONST objv[])
Tcl_Obj *	marker_delete (Bmicrograph *mg, int objc, Tcl_Obj *CONST objv[])
Tcl_Obj *	marker_delete (Breconstruction *rec, int objc, Tcl_Obj *CONST objv[])
Tcl_Obj *	marker_edge (Bmarker *mark, Bimage *p, int objc, Tcl_Obj *CONST objv[])
Tcl_Obj *	marker_accept (Bmarker *mark, int objc, Tcl_Obj *CONST objv[])
Tcl_Obj *	do_tomo_thickness (Bproject *project, int objc, Tcl_Obj *CONST objv[])
int	do_tomo_transfer_seed (Bproject *project, int objc, Tcl_Obj *CONST objv[])
int	do_tomo_findaxis (Bproject *project, int objc, Tcl_Obj *CONST objv[])
int	do_tomo_track (Bproject *project, int objc, Tcl_Obj *CONST objv[])
int	do_tomo_refine (Bproject *project, int objc, Tcl_Obj *CONST objv[])
int	do_tomo_refine_one (Bproject *project, int objc, Tcl_Obj *CONST objv[])
Tcl_Obj *	do_marker (Bproject *project, int objc, Tcl_Obj *CONST objv[])
int	marker_create (Bmarker *mark, int objc, Tcl_Obj *CONST objv[])

Variables
int	verbose
Bimage *	imglist

Detailed Description

A shared object to manage markers in micrograph parameter files in TCL/Tk.

Author

Bernard Heymann

Date

Created: 20030813

Modified: 20200513

Function Documentation

do_marker()

Tcl_Obj * do_marker	(	Bproject *	project,
		int	objc,
		Tcl_Obj *CONST	objv[]
	)

do_tomo_findaxis()

int do_tomo_findaxis	(	Bproject *	project,
		int	objc,
		Tcl_Obj *CONST	objv[]
	)

do_tomo_refine()

int do_tomo_refine	(	Bproject *	project,
		int	objc,
		Tcl_Obj *CONST	objv[]
	)

do_tomo_refine_one()

int do_tomo_refine_one	(	Bproject *	project,
		int	objc,
		Tcl_Obj *CONST	objv[]
	)

do_tomo_thickness()

Tcl_Obj * do_tomo_thickness	(	Bproject *	project,
		int	objc,
		Tcl_Obj *CONST	objv[]
	)

do_tomo_track()

int do_tomo_track	(	Bproject *	project,
		int	objc,
		Tcl_Obj *CONST	objv[]
	)

do_tomo_transfer_seed()

int do_tomo_transfer_seed	(	Bproject *	project,
		int	objc,
		Tcl_Obj *CONST	objv[]
	)

marker_accept()

Tcl_Obj * marker_accept	(	Bmarker *	mark,
		int	objc,
		Tcl_Obj *CONST	objv[]
	)

marker_center()

Tcl_Obj * marker_center	(	Bmarker *	mark,
		Bimage *	p,
		int	objc,
		Tcl_Obj *CONST	objv[]
	)

marker_clear_selection_flag()

Tcl_Obj * marker_clear_selection_flag	(	Bmarker *	marklist,
		int	objc,
		Tcl_Obj *CONST	objv[]
	)

marker_count() [1/4]

Tcl_Obj * marker_count

(

Bfield *

field

)

marker_count() [2/4]

Tcl_Obj * marker_count

(

Bmicrograph *

mg

)

marker_count() [3/4]

Tcl_Obj * marker_count

(

Bproject *

project

)

marker_count() [4/4]

Tcl_Obj * marker_count

(

Breconstruction *

rec

)

marker_create() [1/3]

int marker_create	(	Bmarker *	mark,
		int	objc,
		Tcl_Obj *CONST	objv[]
	)

marker_create() [2/3]

Tcl_Obj * marker_create	(	Bmicrograph *	mg,
		int	objc,
		Tcl_Obj *CONST	objv[]
	)

marker_create() [3/3]

Tcl_Obj * marker_create	(	Breconstruction *	rec,
		int	objc,
		Tcl_Obj *CONST	objv[]
	)

marker_delete() [1/4]

Tcl_Obj * marker_delete	(	Bfield *	field,
		int	objc,
		Tcl_Obj *CONST	objv[]
	)

marker_delete() [2/4]

Tcl_Obj * marker_delete	(	Bmicrograph *	mg,
		int	objc,
		Tcl_Obj *CONST	objv[]
	)

marker_delete() [3/4]

Tcl_Obj * marker_delete	(	Bproject *	project,
		int	objc,
		Tcl_Obj *CONST	objv[]
	)

marker_delete() [4/4]

Tcl_Obj * marker_delete	(	Breconstruction *	rec,
		int	objc,
		Tcl_Obj *CONST	objv[]
	)

marker_edge()

Tcl_Obj * marker_edge	(	Bmarker *	mark,
		Bimage *	p,
		int	objc,
		Tcl_Obj *CONST	objv[]
	)

marker_extract() [1/2]

Tcl_Obj * marker_extract	(	Bmicrograph *	mg,
		Bimage *	p,
		int	objc,
		Tcl_Obj *CONST	objv[]
	)

marker_extract() [2/2]

Tcl_Obj * marker_extract	(	Breconstruction *	rec,
		Bimage *	p,
		int	objc,
		Tcl_Obj *CONST	objv[]
	)

marker_find()

Tcl_Obj * marker_find	(	Bmicrograph *	mg,
		Bimage *	p,
		int	objc,
		Tcl_Obj *CONST	objv[]
	)

marker_fom()

Tcl_Obj * marker_fom

(

Bmarker *

mark

)

marker_fom_maximum()

Tcl_Obj * marker_fom_maximum

(

Bmarker *

mark

)

marker_generate_from_seed()

Tcl_Obj * marker_generate_from_seed

(

Bproject *

project

)

marker_get_selection_flag()

Tcl_Obj * marker_get_selection_flag	(	Bmarker *	marklist,
		int	objc,
		Tcl_Obj *CONST	objv[]
	)

marker_ids() [1/4]

Tcl_Obj * marker_ids	(	Bfield *	field,
		double	fom_cut
	)

marker_ids() [2/4]

Tcl_Obj * marker_ids	(	Bmicrograph *	mg,
		double	fom_cut
	)

marker_ids() [3/4]

Tcl_Obj * marker_ids	(	Bproject *	project,
		double	fom_cut
	)

marker_ids() [4/4]

Tcl_Obj * marker_ids	(	Breconstruction *	rec,
		double	fom_cut
	)

marker_list() [1/4]

Tcl_Obj * marker_list

(

Bfield *

field

)

marker_list() [2/4]

Tcl_Obj * marker_list

(

Bmicrograph *

mg

)

marker_list() [3/4]

Tcl_Obj * marker_list

(

Bproject *

project

)

marker_list() [4/4]

Tcl_Obj * marker_list

(

Breconstruction *

rec

)

marker_location()

Tcl_Obj * marker_location

(

Bmarker *

mark

)

marker_move()

Tcl_Obj * marker_move	(	Bmarker *	marklist,
		int	objc,
		Tcl_Obj *CONST	objv[]
	)

marker_residual() [1/2]

Tcl_Obj * marker_residual

(

Bmarker *

mark

)

marker_residual() [2/2]

Tcl_Obj * marker_residual

(

Bproject *

project

)

marker_select()

Tcl_Obj * marker_select	(	Bmarker *	marklist,
		double	rad,
		int	objc,
		Tcl_Obj *CONST	objv[]
	)

marker_select_rectangle()

Tcl_Obj * marker_select_rectangle	(	Bmarker *	marklist,
		int	objc,
		Tcl_Obj *CONST	objv[]
	)

marker_set_selection_flag()

Tcl_Obj * marker_set_selection_flag	(	Bmarker *	marklist,
		int	objc,
		Tcl_Obj *CONST	objv[]
	)

marker_snap()

Tcl_Obj * marker_snap	(	Bmicrograph *	mg,
		Bimage *	p,
		long	mid,
		int	objc,
		Tcl_Obj *CONST	objv[]
	)

Variable Documentation

imglist

Bimage* imglist

extern

verbose

int verbose

extern