MolecularSequence

: Public Class

Created:	10/17/2008 11:37:08 AM
Modified:	3/26/2015 6:04:07 PM

Project:
Author:
Version:	1.0
Phase:	1.0
Status:
Complexity:	Easy
Difficulty:
Priority:
Multiplicity:
Advanced:
UUID:	{FD7C858E-0293-46d9-AC19-E9496E02E711}
Appears In:	UML-Based Comprehensive BRIDG Model Diagram, View EX: Experiment, View MB: Molecular Biology

DEFINITION: A representation of a linear arrangement of organic compounds. EXAMPLE(S): The sequence of TP53 protein, the sequence of TP53 gene, the first 20 nucleotides of a BRCA1 mRNA OTHER NAME(S): NOTE(S):

Attributes
Associations To
Associations From
Tagged Values
Other Links

Attribute

Public SC
value

Details:

Alias:
Initial:
Stereotype:
Ordered:
Range:	Range:0 to 1
Transient:	False
Derived:	False
IsID:	False

Map:LSDAM=MolecularSequence.value

Notes:

DEFINITION:#lt;br /#gt;#lt;/p#gt;#lt;p#gt;A representation of the molecular sequence, usually in abbreviated form and expressed according to conventional practices.#lt;br /#gt;#lt;/p#gt;#lt;p#gt;#lt;br /#gt;#lt;/p#gt;#lt;p#gt;EXAMPLE(S):#lt;br /#gt;#lt;/p#gt;#lt;p#gt;DNA sequences are usually expressed as a string of A, C, G, and T characters starting from the 5' end of the sequence, while protein sequences are usually given as a string of single character amino acid codes starting at the N-terminus. In both cases, IUPAC codes are generally used to represent the sequence.#lt;br /#gt;#lt;/p#gt;#lt;p#gt;#lt;br /#gt;#lt;/p#gt;#lt;p#gt;OTHER NAME(S):#lt;br /#gt;#lt;/p#gt;#lt;p#gt;#lt;br /#gt;#lt;/p#gt;#lt;p#gt;NOTE(S):#lt;br /#gt;#lt;/p#gt;

Element	Source Role	Target Role
Material Class	Name: characterizingMolecularSequence	Name: characterizedMaterial
Details: DESCRIPTION:<br /></p><p>Each MolecularSequence might characterize one or more Material. Each Material might be characterized by one or more MolecularSequence.<br /></p><p><br /></p><p>DEFINITION:<br /></p><p><br /></p><p>EXAMPLE(S):<br /></p><p><br /></p><p>OTHER NAME(S):<br /></p><p><br /></p><p>NOTE(S):<br /></p>
BiologicEntityClassification Class	Name: includedMolecularSequence	Name: includingBiologicEntityClassification
Details: DESCRIPTION:<br /></p><p>Each MolecularSequence always is included in one BiologicEntityClassification. Each BiologicEntityClassification might include one or more MolecularSequence.<br /></p><p><br /></p><p>DEFINITION:<br /></p><p><br /></p><p>EXAMPLE(S):<br /></p><p><br /></p><p>OTHER NAME(S):<br /></p><p><br /></p><p>NOTE(S):<br /></p>

Element	Source Role	Target Role
ExperimentalActivityItem Class	Name: playedExperimentalActivityItem	Name: playingMolecularSequence
Details: DESCRIPTION:<br /></p><p>Each ExperimentalActivityItem might be played by one MolecularSequence. Each MolecularSequence might play one or more ExperimentalActivityItem. <br /></p><p><br /></p><p>DEFINITION:<br /></p><p><br /></p><p>EXAMPLE(S):<br /></p><p><br /></p><p>OTHER NAME(S):<br /></p><p><br /></p><p>NOTE(S):<br /></p>

Tag	Value
Map:LSDAM	MolecularSequence
Details:
Map:LSDAMv2.2.3Plus	MolecularSequence
Details:

Object	Type	Connection	Direction	Notes
NucleicAcidSequence	Class	Generalization	From	DESCRIPTION: Each AminoAcidSequence always specializes one MolecularSequence. Each MolecularSequence might be specialized by one AminoAcidSequence. DEFINITION: EXAMPLE(S): OTHER NAME(S): NOTE(S):
AminoAcidSequence	Class	Generalization	From	DESCRIPTION: Each AminoAcidSequence always specializes one MolecularSequence. Each MolecularSequence might be specialized by one AminoAcidSequence. DEFINITION: EXAMPLE(S): OTHER NAME(S): NOTE(S):