NucleicAcidPhysicalLocation

: Public Class

Created:	9/9/2008 4:05:40 PM
Modified:	3/25/2015 4:18:26 PM

Project:
Author:
Version:	1.0
Phase:	1.0
Status:
Complexity:	Easy
Difficulty:
Priority:
Multiplicity:
Advanced:
UUID:	{B6B18ADC-3D7B-4a1c-8F16-F709FB9B1512}
Appears In:	UML-Based Comprehensive BRIDG Model Diagram, View MB: Molecular Biology

DEFINITION: A position or a region on a nucleic acid sequence. EXAMPLE(S): the first 20 bases of the BRCA1 gene OTHER NAME(S): NOTE(S):

Attributes
Associations To
Associations From
Tagged Values

Attribute

Public INT.NONNEG
startCoordinate

Details:

Alias:
Initial:
Stereotype:
Ordered:
Range:	Range:0 to 1
Transient:	False
Derived:	False
IsID:	False

Map:LSDAM=NucleicAcidPhysicalLocation.startCoordinate

Notes:

DEFINITION:#lt;br /#gt;#lt;/p#gt;#lt;p#gt;The beginning coordinate of the range (inclusive), given as an integer offset from the start of the sequence.#lt;br /#gt;#lt;/p#gt;#lt;p#gt;#lt;br /#gt;#lt;/p#gt;#lt;p#gt;EXAMPLE(S):#lt;br /#gt;#lt;/p#gt;#lt;p#gt;12#lt;br /#gt;#lt;/p#gt;#lt;p#gt;#lt;br /#gt;#lt;/p#gt;#lt;p#gt;OTHER NAME(S):#lt;br /#gt;#lt;/p#gt;#lt;p#gt;#lt;br /#gt;#lt;/p#gt;#lt;p#gt;NOTE(S):#lt;br /#gt;#lt;/p#gt;

Public INT.NONNEG
endCoordinate

Details:

Alias:
Initial:
Stereotype:
Ordered:
Range:	Range:0 to 1
Transient:	False
Derived:	False
IsID:	False

Map:LSDAM=NucleicAcidPhysicalLocation.endCoordinate

Notes:

DEFINITION:#lt;br /#gt;#lt;/p#gt;#lt;p#gt;The terminal coordinate of the range (inclusive), given as an integer offset from the start of the sequence.#lt;br /#gt;#lt;/p#gt;#lt;p#gt;#lt;br /#gt;#lt;/p#gt;#lt;p#gt;EXAMPLE(S):#lt;br /#gt;#lt;/p#gt;#lt;p#gt;100#lt;br /#gt;#lt;/p#gt;#lt;p#gt;#lt;br /#gt;#lt;/p#gt;#lt;p#gt;OTHER NAME(S):#lt;br /#gt;#lt;/p#gt;#lt;p#gt;#lt;br /#gt;#lt;/p#gt;#lt;p#gt;NOTE(S):#lt;br /#gt;#lt;/p#gt;

Element	Source Role	Target Role
NucleicAcidSequence Class	Name: includingNucleicAcidPhysicalLocation	Name: includedNucleicAcidSequence
Details: DESCRIPTION:<br /></p><p>Each NucleicAcidPhysicalLocation always includes one NucleicAcidSequence. Each NucleicAcidSequence might be included in one or more NucleicAcidPhysicalLocation.<br /></p><p><br /></p><p>DEFINITION:<br /></p><p><br /></p><p>EXAMPLE(S):<br /></p><p><br /></p><p>OTHER NAME(S):<br /></p><p><br /></p><p>NOTE(S):<br /></p>
CytobandRange Class	Name: locatingNucleicAcidPhysicalLocation	Name: locatedCytobandRange
Details: DESCRIPTION:<br /></p><p>Each NucleicAcidPhysicalLocation might be for one CytobandRange. Each CytobandRange always have one or more NucleicAcidPhysicalLocation. <br /></p><p><br /></p><p>DEFINITION:<br /></p><p><br /></p><p>EXAMPLE(S):<br /></p><p><br /></p><p>OTHER NAME(S):<br /></p><p><br /></p><p>NOTE(S):<br /></p>
Chromosome Class	Name: locatedNucleicAcidPhysicalLocation	Name: locatingChromosome
Details: DESCRIPTION:<br /></p><p>Each NucleicAcidPhysicalLocation always is located on one Chromosome. Each Chromosome always has one or more NucleicAcidPhysicalLocation.<br /></p><p><br /></p><p>DEFINITION:<br /></p><p><br /></p><p>EXAMPLE(S):<br /></p><p><br /></p><p>OTHER NAME(S):<br /></p><p><br /></p><p>NOTE(S):<br /></p>
AminoAcidSequence Class	Name: translatedNucleaicAcidPhysicalLocation	Name: translatingAminoAcidSequence
Details: DESCRIPTION:<br /></p><p>Each NucleicAcidPhysicalLocation might be translated to one AminoAcidSequence. Each AminoAcidSequence always is translated from one or more NucleicAcidPhysicalLocation.<br /></p><p><br /></p><p>DEFINITION:<br /></p><p><br /></p><p>EXAMPLE(S):<br /></p><p><br /></p><p>OTHER NAME(S):<br /></p><p><br /></p><p>NOTE(S):<br /></p>

Element	Source Role	Target Role
NucleicAcidSequenceFeature Class	Name: includedNucleicAcidSequenceFeature	Name: includingNucleicAcidPhysicalLocation
Details: DESCRIPTION:<br /></p><p>Each NucleicAcidSequenceFeature always is included in one or more NucleicAcidPhysicalLocation. Each NucleicAcidPhysicalLocation might include one or more NucleicAcidSequenceFeature. <br /></p><p><br /></p><p>DEFINITION:<br /></p><p><br /></p><p>EXAMPLE(S):<br /></p><p><br /></p><p>OTHER NAME(S):<br /></p><p><br /></p><p>NOTE(S):<br /></p>

Tag	Value
Map:LSDAM	NucleicAcidPhysicalLocation
Details:
Map:LSDAMv2.2.3Plus	NucleicAcidPhysicalLocation
Details: