Out of Scope for HL7 Sep 2018 Ballot Cycle: Molecular Biology Sub-Domain::NucleicAcidPhysicalLocation

: Public Class

Created:	9/9/2008 4:05:40 PM
Modified:	8/26/2017 2:24:26 AM

Project:
Author:
Version:	1.0
Phase:	1.0
Status:
Complexity:	Easy
Difficulty:
Priority:
Multiplicity:
Advanced:
UUID:	{B6B18ADC-3D7B-4a1c-8F16-F709FB9B1512}
Appears In:	UML-Based Comprehensive BRIDG Model Diagram, View MB: Molecular Biology

DEFINITION: A position or a region on a nucleic acid sequence. EXAMPLE(S): the first 20 bases of the BRCA1 gene OTHER NAME(S): NOTE(S):

Attributes
Associations To
Associations From
Tagged Values

Attribute

Public INT.NONNEG
startCoordinate

Details:

Alias:
Initial:
Stereotype:
Ordered:
Range:	Range:0 to 1
Transient:	False
Derived:	False
IsID:	False

Map:LSDAMv2.2.3Plus=NucleicAcidPhysicalLocation.startCoordinate

Notes:

DEFINITION: The beginning coordinate of the range (inclusive), given as an integer offset from the start of the sequence. EXAMPLE(S): 12 OTHER NAME(S): NOTE(S):

Public INT.NONNEG
endCoordinate

Details:

Alias:
Initial:
Stereotype:
Ordered:
Range:	Range:0 to 1
Transient:	False
Derived:	False
IsID:	False

Map:LSDAMv2.2.3Plus=NucleicAcidPhysicalLocation.endCoordinate

Notes:

DEFINITION: The terminal coordinate of the range (inclusive), given as an integer offset from the start of the sequence. EXAMPLE(S): 100 OTHER NAME(S): NOTE(S):

Element	Source Role	Target Role
Chromosome Class	Name: locatedNucleicAcidPhysicalLocation	Name: locatingChromosome
Details: DESCRIPTION:<br/>Each NucleicAcidPhysicalLocation always is located on one Chromosome. Each Chromosome always has one or more NucleicAcidPhysicalLocation.<br/><br/>DEFINITION:<br/><br/>EXAMPLE(S):<br/><br/>OTHER NAME(S):<br/><br/>NOTE(S):<br/>
CytobandRange Class	Name: locatingNucleicAcidPhysicalLocation	Name: locatedCytobandRange
Details: DESCRIPTION:<br/>Each NucleicAcidPhysicalLocation might be for one CytobandRange. Each CytobandRange always have one or more NucleicAcidPhysicalLocation. <br/><br/>DEFINITION:<br/><br/>EXAMPLE(S):<br/><br/>OTHER NAME(S):<br/><br/>NOTE(S):<br/>
AminoAcidSequence Class	Name: translatedNucleaicAcidPhysicalLocation	Name: translatingAminoAcidSequence
Details: DESCRIPTION:<br/>Each NucleicAcidPhysicalLocation might be translated to one AminoAcidSequence. Each AminoAcidSequence always is translated from one or more NucleicAcidPhysicalLocation.<br/><br/>DEFINITION:<br/><br/>EXAMPLE(S):<br/><br/>OTHER NAME(S):<br/><br/>NOTE(S):<br/>
NucleicAcidSequence Class	Name: includingNucleicAcidPhysicalLocation	Name: includedNucleicAcidSequence
Details: DESCRIPTION:<br/>Each NucleicAcidPhysicalLocation always includes one NucleicAcidSequence. Each NucleicAcidSequence might be included in one or more NucleicAcidPhysicalLocation.<br/><br/>DEFINITION:<br/><br/>EXAMPLE(S):<br/><br/>OTHER NAME(S):<br/><br/>NOTE(S):<br/>

Element	Source Role	Target Role
NucleicAcidSequenceFeature Class	Name: includedNucleicAcidSequenceFeature	Name: includingNucleicAcidPhysicalLocation
Details: DESCRIPTION:<br/>Each NucleicAcidSequenceFeature always is included in one or more NucleicAcidPhysicalLocation. Each NucleicAcidPhysicalLocation might include one or more NucleicAcidSequenceFeature. <br/><br/>DEFINITION:<br/><br/>EXAMPLE(S):<br/><br/>OTHER NAME(S):<br/><br/>NOTE(S):<br/>

Tag	Value
Map:LSDAMv2.2.3Plus	NucleicAcidPhysicalLocation
Details: