: Public Class
Created: 10/17/2008 1:09:17 AM
Modified: 8/26/2017 2:24:26 AM
Project:
Advanced:
DEFINITION:<br/>An annotation assigned to a defined nucleic acid physical location. <br/><br/>EXAMPLE(S):<br/>promoter region, protein binding domains<br/><br/>OTHER NAME(S):<br/><br/>NOTE(S):<br/>
Attribute
Public CD
  typeCode
Details:
Map:LSDAMv2.2.3Plus=NucleicAcidSequenceFeature.typeCode
Notes: DEFINITION:<br/>A coded value specifying the category of the nucleic acid sequence feature.  <br/><br/>EXAMPLE(S):<br/>DNA methylation<br/><br/>OTHER NAME(S):<br/><br/>NOTE(S):<br/>[Glycosylation Site:C16643, C37901; Binding Site:C13671]<br/>
Public ST
  orientation
Details:
Map:LSDAMv2.2.3Plus=NucleicAcidSequenceFeature.orientation
Notes: DEFINITION:<br/>The orientation of the feature relative to the sequence upon which it is annotated.  <br/><br/>EXAMPLE(S):<br/>"forward", "for", "F", "+", "reverse", "rev", "R",  "-"<br/><br/>OTHER NAME(S):<br/><br/>NOTE(S):<br/>Features that are annotated on the same strand as the underlying sequence are usually indicated by "forward", "for", "F", or "+".  Features that are on the opposite strand (the reverse-complement of the underlying sequence) are usually indicated by "reverse", "rev", "R", or "-".<br/>
Element Source Role Target Role
NucleicAcidPhysicalLocation
Class  
Name: includedNucleicAcidSequenceFeature
 
Name: includingNucleicAcidPhysicalLocation
 
Details:
DESCRIPTION:<br/>Each NucleicAcidSequenceFeature always is included in one or more NucleicAcidPhysicalLocation. Each NucleicAcidPhysicalLocation might include one or more NucleicAcidSequenceFeature. <br/><br/>DEFINITION:<br/><br/>EXAMPLE(S):<br/><br/>OTHER NAME(S):<br/><br/>NOTE(S):<br/>
Element Source Role Target Role
MolecularSequenceAnnotation
Class  
Name: reportingMolecularSequenceAnnotation
 
Name: reportedNucleicAcidSequenceFeature
 
Details:
DESCRIPTION:<br/>Each MolecularSequenceAnnotation might report one or more NucleicAcidSequenceFeature.  Each NucleicAcidSequenceFeature might be reported by one or more MolecularSequenceAnnotation.<br/><br/>DEFINITION:<br/><br/>EXAMPLE(S):<br/><br/>OTHER NAME(S):<br/><br/>NOTE(S):<br/>
Biomarker
Class  
Name: basingBiomarker
 
Name: basedNucleicAcidSequenceFeature
 
Details:
DESCRIPTION:<br/>Each Biomarker might be based on one or more NucleicAcidSequenceFeature.  Each NucleicAcidSequenceFeature might be the basis of one or more Biomarker.<br/><br/>DEFINITION:<br/><br/>EXAMPLE(S):<br/><br/>OTHER NAME(S):<br/><br/>NOTE(S):<br/>
Tag Value
Map:LSDAMv2.2.3Plus NucleicAcidSequenceFeature
Details:
 
Object Type Connection Direction Notes
GeneticVariation Class Generalization From DESCRIPTION: Each GeneticVariation always specializes one NucleicAcidSequenceFeature. Each NucleicAcidSequenceFeature might be specialized by one GeneticVariation. DEFINITION: EXAMPLE(S): OTHER NAME(S): NOTE(S):
Intron Class Generalization From DESCRIPTION: Each Intron always specializes one NucleicAcidSequenceFeature. Each NucleicAcidSequenceFeature might be specialized by one Intron. DEFINITION: EXAMPLE(S): OTHER NAME(S): NOTE(S):
Exon Class Generalization From DESCRIPTION: Each Exon always specializes one NucleicAcidSequenceFeature. Each NucleicAcidSequenceFeature might be specialized by one Exon. DEFINITION: EXAMPLE(S): OTHER NAME(S): NOTE(S):
Gene Class Generalization From DESCRIPTION: Each Gene always specializes one NucleicAcidSequenceFeature. Each NucleicAcidSequenceFeature might be specialized by one Gene. DEFINITION: EXAMPLE(S): OTHER NAME(S): NOTE(S):