Out of Scope for HL7 Sep 2018 Ballot Cycle: Molecular Biology Sub-Domain::NucleicAcidSequenceFeature

: Public Class

Created:	10/17/2008 1:09:17 AM
Modified:	8/26/2017 2:24:26 AM

Project:
Author:
Version:	1.0
Phase:	1.0
Status:
Complexity:	Easy
Difficulty:
Priority:
Multiplicity:
Advanced:
UUID:	{7A7836F5-F09E-48e8-8E69-30841FCB4796}
Appears In:	UML-Based Comprehensive BRIDG Model Diagram, View EX: Experiment, View MB: Molecular Biology

DEFINITION: An annotation assigned to a defined nucleic acid physical location. EXAMPLE(S): promoter region, protein binding domains OTHER NAME(S): NOTE(S):

Attributes
Associations To
Associations From
Tagged Values
Other Links

Attribute

Public CD
typeCode

Details:

Alias:
Initial:
Stereotype:
Ordered:
Range:	Range:0 to 1
Transient:	False
Derived:	False
IsID:	False

Map:LSDAMv2.2.3Plus=NucleicAcidSequenceFeature.typeCode

Notes:

DEFINITION: A coded value specifying the category of the nucleic acid sequence feature. EXAMPLE(S): DNA methylation OTHER NAME(S): NOTE(S): [Glycosylation Site:C16643, C37901; Binding Site:C13671]

Public ST
orientation

Details:

Alias:
Initial:
Stereotype:
Ordered:
Range:	Range:0 to 1
Transient:	False
Derived:	False
IsID:	False

Map:LSDAMv2.2.3Plus=NucleicAcidSequenceFeature.orientation

Notes:

DEFINITION: The orientation of the feature relative to the sequence upon which it is annotated. EXAMPLE(S): "forward", "for", "F", "+", "reverse", "rev", "R", "-" OTHER NAME(S): NOTE(S): Features that are annotated on the same strand as the underlying sequence are usually indicated by "forward", "for", "F", or "+". Features that are on the opposite strand (the reverse-complement of the underlying sequence) are usually indicated by "reverse", "rev", "R", or "-".

Element	Source Role	Target Role
NucleicAcidPhysicalLocation Class	Name: includedNucleicAcidSequenceFeature	Name: includingNucleicAcidPhysicalLocation
Details: DESCRIPTION:<br/>Each NucleicAcidSequenceFeature always is included in one or more NucleicAcidPhysicalLocation. Each NucleicAcidPhysicalLocation might include one or more NucleicAcidSequenceFeature. <br/><br/>DEFINITION:<br/><br/>EXAMPLE(S):<br/><br/>OTHER NAME(S):<br/><br/>NOTE(S):<br/>

Element	Source Role	Target Role
MolecularSequenceAnnotation Class	Name: reportingMolecularSequenceAnnotation	Name: reportedNucleicAcidSequenceFeature
Details: DESCRIPTION:<br/>Each MolecularSequenceAnnotation might report one or more NucleicAcidSequenceFeature. Each NucleicAcidSequenceFeature might be reported by one or more MolecularSequenceAnnotation.<br/><br/>DEFINITION:<br/><br/>EXAMPLE(S):<br/><br/>OTHER NAME(S):<br/><br/>NOTE(S):<br/>
Biomarker Class	Name: basingBiomarker	Name: basedNucleicAcidSequenceFeature
Details: DESCRIPTION:<br/>Each Biomarker might be based on one or more NucleicAcidSequenceFeature. Each NucleicAcidSequenceFeature might be the basis of one or more Biomarker.<br/><br/>DEFINITION:<br/><br/>EXAMPLE(S):<br/><br/>OTHER NAME(S):<br/><br/>NOTE(S):<br/>

Tag	Value
Map:LSDAMv2.2.3Plus	NucleicAcidSequenceFeature
Details:

Object	Type	Connection	Direction	Notes
GeneticVariation	Class	Generalization	From	DESCRIPTION: Each GeneticVariation always specializes one NucleicAcidSequenceFeature. Each NucleicAcidSequenceFeature might be specialized by one GeneticVariation. DEFINITION: EXAMPLE(S): OTHER NAME(S): NOTE(S):
Intron	Class	Generalization	From	DESCRIPTION: Each Intron always specializes one NucleicAcidSequenceFeature. Each NucleicAcidSequenceFeature might be specialized by one Intron. DEFINITION: EXAMPLE(S): OTHER NAME(S): NOTE(S):
Exon	Class	Generalization	From	DESCRIPTION: Each Exon always specializes one NucleicAcidSequenceFeature. Each NucleicAcidSequenceFeature might be specialized by one Exon. DEFINITION: EXAMPLE(S): OTHER NAME(S): NOTE(S):
Gene	Class	Generalization	From	DESCRIPTION: Each Gene always specializes one NucleicAcidSequenceFeature. Each NucleicAcidSequenceFeature might be specialized by one Gene. DEFINITION: EXAMPLE(S): OTHER NAME(S): NOTE(S):