: Public <<DEPRECATED>> Class
Created: 10/17/2008 11:37:08 AM
Modified: 7/3/2019 4:47:31 PM
Project:
Advanced:
DEFINITION:<br/>A representation of a linear arrangement of organic compounds. <br/><br/>EXAMPLE(S):<br/>The sequence of TP53 protein, the sequence of TP53 gene, the first 20 nucleotides of a BRCA1 mRNA<br/><br/>OTHER NAME(S):<br/><br/>NOTE(S):<br/>
Attribute
Public SC
  value
Details:
Map:LSDAMv2.2.3Plus=MolecularSequence.value
Notes: DEFINITION:<br/>A representation of the molecular sequence, usually in abbreviated form and expressed according to conventional practices.<br/><br/>EXAMPLE(S):<br/>DNA sequences are usually expressed as a string of A, C, G, and T characters starting from the 5' end of the sequence, while protein sequences are usually given as a string of single character amino acid codes starting at the N-terminus.  In both cases, IUPAC codes are generally used to represent the sequence.<br/><br/>OTHER NAME(S):<br/><br/>NOTE(S):<br/>
Element Source Role Target Role
BiologicEntityClassification
Class   		Name: includedMolecularSequence
  		Name: includingBiologicEntityClassification
 
Details:
DESCRIPTION:<br/>Each MolecularSequence always is included in one BiologicEntityClassification. Each BiologicEntityClassification might include one or more MolecularSequence.<br/><br/>DEFINITION:<br/><br/>EXAMPLE(S):<br/><br/>OTHER NAME(S):<br/><br/>NOTE(S):<br/>
Material
Class   		Name: characterizingMolecularSequence
  		Name: characterizedMaterial
 
Details:
DESCRIPTION:<br/>Each MolecularSequence might characterize one or more Material. Each Material might be characterized by one or more MolecularSequence.<br/><br/>DEFINITION:<br/><br/>EXAMPLE(S):<br/><br/>OTHER NAME(S):<br/><br/>NOTE(S):<br/>
Element Source Role Target Role
ExperimentalActivityItem
Class   		Name: playedExperimentalActivityItem
  		Name: playingMolecularSequence
 
Details:
DESCRIPTION:<br/>Each ExperimentalActivityItem might be played by one MolecularSequence.  Each MolecularSequence might play one or more ExperimentalActivityItem. <br/><br/>DEFINITION:<br/><br/>EXAMPLE(S):<br/><br/>OTHER NAME(S):<br/><br/>NOTE(S):<br/>
Tag Value
Map:LSDAMv2.2.3Plus MolecularSequence
Details:
 
Object Type Connection Direction Notes
«DEPRECATED» AminoAcidSequence Class Generalization From DESCRIPTION: Each AminoAcidSequence always specializes one MolecularSequence. Each MolecularSequence might be specialized by one AminoAcidSequence. DEFINITION: EXAMPLE(S): OTHER NAME(S): NOTE(S):
«DEPRECATED» NucleicAcidSequence Class Generalization From DESCRIPTION: Each AminoAcidSequence always specializes one MolecularSequence. Each MolecularSequence might be specialized by one AminoAcidSequence. DEFINITION: EXAMPLE(S): OTHER NAME(S): NOTE(S):