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icdc-model-tool

ICDC data model representations and build tools

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Integrated Canine Data Commons Data Model

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Additional model files

Perl case case case_id patient_first_name patient_id cohort cohort cohort_description cohort_dose cohort_id case->cohort member_of adverse_event adverse_event adverse_event_agent_dose adverse_event_agent_name adverse_event_description adverse_event_grade adverse_event_grade_description adverse_event_term attribution_to_commercial attribution_to_disease attribution_to_ind attribution_to_other attribution_to_research date_of_onset date_of_resolution day_in_cycle dose_limiting_toxicity existing_adverse_event ongoing_adverse_event other_attribution_description unexpected_adverse_event case->adverse_event had_adverse_event canine_individual canine_individual canine_individual_id case->canine_individual represents study study accession_id clinical_study_description clinical_study_designation clinical_study_id clinical_study_name clinical_study_type date_of_iacuc_approval dates_of_conduct study_disposition case->study member_of study_arm study_arm arm arm_description arm_id ctep_treatment_assignment_code case->study_arm of_study_arm off_study off_study best_resp_vet_tx_tp_best_response best_resp_vet_tx_tp_secondary_response date_last_medication_administration date_of_best_response date_of_disease_progression date_off_study date_off_treatment document_number reason_off_study case->off_study went_off_study off_treatment off_treatment best_resp_vet_tx_tp_best_response best_resp_vet_tx_tp_secondary_response date_last_medication_administration date_of_best_response date_of_disease_progression date_off_treatment document_number reason_off_treatment case->off_treatment went_off_treatment diagnosis diagnosis best_response concurrent_disease concurrent_disease_type date_of_diagnosis date_of_histology_confirmation diagnosis_id disease_term follow_up_data histological_grade histology_cytopathology pathology_report primary_disease_site stage_of_disease treatment_data diagnosis->case of_case sample sample comment date_of_sample_collection general_sample_pathology length_of_tumor molecular_subtype necropsy_sample percentage_tumor physical_sample_type sample_chronology sample_id sample_preservation sample_site specific_sample_pathology summarized_sample_type tumor_grade tumor_sample_origin volume_of_tumor width_of_tumor sample->case of_case sample->sample next visit visit visit_date visit_id visit_number sample->visit on_visit program program program_acronym program_external_url program_full_description program_name program_short_description program_sort_order cycle cycle cycle_number date_of_cycle_end date_of_cycle_start cycle->case of_case prior_surgery prior_surgery anatomical_site_of_surgery date_of_surgery procedure residual_disease surgical_finding therapeutic_indicator prior_surgery->prior_surgery next enrollment enrollment date_of_informed_consent date_of_registration enrollment_id initials patient_subgroup registering_institution site_short_name veterinary_medical_center prior_surgery->enrollment at_enrollment assay assay assay->sample of_sample physical_exam physical_exam assessment_timepoint body_system date_of_examination day_in_cycle pe_comment pe_finding phase_pe physical_exam->enrollment at_enrollment physical_exam->visit on_visit disease_extent disease_extent date_of_evaluation evaluation_code evaluation_number lesion_description lesion_number lesion_site longest_measurement measurable_lesion measured_how previously_irradiated previously_treated target_lesion disease_extent->visit on_visit cohort->study member_of cohort->study_arm member_of registration registration registration_id registration_origin registration->case of_case adverse_event->case of_case adverse_event->adverse_event next agent agent document_number medication adverse_event->agent of_agent file file file_description file_format file_location file_name file_size file_status file_type md5sum uuid file->case of_case file->diagnosis from_diagnosis file->sample of_sample file->assay of_assay file->study of_study follow_up follow_up contact_type date_of_last_contact document_number explain_unknown_status patient_status physical_exam_changes physical_exam_performed treatment_since_last_contact follow_up->case of_case prior_therapy prior_therapy agent_name agent_units_of_measure any_therapy best_response_to_prior_therapy date_of_first_dose date_of_last_dose date_of_last_dose_any_therapy date_of_last_dose_nsaid date_of_last_dose_steroid dose_schedule min_rsdl_dz_tx_ind_nsaids_treatment_pe nonresponse_therapy_type number_of_prior_regimens_any_therapy number_of_prior_regimens_nsaid number_of_prior_regimens_steroid prior_nsaid_exposure prior_steroid_exposure prior_therapy_type therapy_type total_dose total_number_of_doses_any_therapy total_number_of_doses_nsaid total_number_of_doses_steroid treatment_performed_at_site treatment_performed_in_minimal_residual tx_loc_geo_loc_ind_nsaid prior_therapy->prior_therapy next prior_therapy->enrollment at_enrollment biospecimen_source biospecimen_source biospecimen_repository_acronym biospecimen_repository_full_name principal_investigator principal_investigator pi_first_name pi_last_name pi_middle_initial principal_investigator->study of_study enrollment->case of_case study->program member_of demographic demographic additional_breed_detail breed date_of_birth demographic_id neutered_indicator patient_age_at_enrollment sex weight demographic->case of_case study_arm->study member_of vital_signs vital_signs assessment_timepoint body_surface_area body_temperature date_of_vital_signs ecg modified_ecog patient_weight phase pulse pulse_ox respiration_pattern respiration_rate systolic_bp vital_signs->visit on_visit study_site study_site registering_institution site_short_name veterinary_medical_center study_site->study of_study publication publication authorship digital_object_id journal_citation publication_title pubmed_id year_of_publication publication->study of_study visit->case of_case visit->cycle of_cycle visit->visit next lab_exam lab_exam lab_exam->visit on_visit image_collection image_collection collection_access image_collection_name image_collection_url image_type_included repository_name image_collection->study of_study agent->study_arm of_study_arm image image image->assay of_assay agent_administration agent_administration comment date_of_missed_dose document_number dose_level dose_units_of_measure medication medication_actual_dose medication_actual_units_of_measure medication_course_number medication_duration medication_lot_number medication_missed_dose medication_units_of_measure medication_vial_id missed_dose_amount missed_dose_units_of_measure phase route_of_administration start_time stop_time agent_administration->visit on_visit agent_administration->agent of_agent