Program to search an image with multiple projections and orient them. More...

#include "rwimg.h"
#include "rwmodel.h"
#include "utilities.h"
#include "options.h"
#include "timer.h"

Functions
Bmodel *	img_match (Bimage p, Bimage pref, double res_hi, double res_lo, double angle_inc, double threshold, long exclusion, double mask_rad)

Bmodel *	img_match_one (Bimage p, long img_num, Bimage pref, double res_hi, double res_lo, double angle_inc, double threshold, long exclusion, double mask_rad, fft_plan planf, fft_plan planb)

int	main (int argc, char **argv)

Bimage *	img_reference_prepare (Bimage *pref, long nn, Vector3< long > size)

Variables
int	verbose

const char *	use []

Detailed Description

Program to search an image with multiple projections and orient them.

Author: Bernard Heymann

Date: Created: 20170720; Modified: 20190821

clang++ -o bin/bmatch src/bmatch.cpp -I. -I/usr/local/include -I/Users/bernard/b20/bsoft/include -L/Users/bernard/b20/bsoft/lib -lbsoft -DHAVE_FFTW3 -std=c++11 -I/Users/bernard/b20/fftw-3.3.6-pl2/include

Function Documentation

◆ img_match()

Bmodel * img_match	(	Bimage *	p,
		Bimage *	pref,
		double	res_hi,
		double	res_lo,
		double	angle_inc,
		double	threshold,
		long	exclusion,
		double	mask_rad
	)

◆ img_match_one()

Bmodel * img_match_one	(	Bimage *	p,
		long	img_num,
		Bimage *	pref,
		double	res_hi,
		double	res_lo,
		double	angle_inc,
		double	threshold,
		long	exclusion,
		double	mask_rad,
		fft_plan	planf,
		fft_plan	planb
	)

◆ img_reference_prepare()

Bimage * img_reference_prepare	(	Bimage *	pref,
		long	nn,
		Vector3< long >	size
	)

◆ main()

int main	(	int	argc,
		char **	argv
	)

Variable Documentation

◆ use

const char* use[]

Initial value:

= {
" ",
"Usage: bmatch [options] img.mrc cc.map",
"--------------------------------------",
"Searching an image with a set of 2D templates/references",
"Orientations are taken from the input projections.",
" ",
 
 
" ",
"Parameters:",
"-verbose 7               Verbosity of output.",
"-datatype u              Force writing of a new data type.",
"-sampling 2,3.5,1        Sampling before rescaling (angstrom/voxel, a single value sets all three).",
"-resolution 25,200       Resolution limits (angstrom).",
"-angle 2.5               Angular increment (default 3 degrees).",
"-origin 0.8,-10,15.7     Set the origin (default from input image).",
"-threshold 0.24          Threshold to find correlation peaks.",
"-exclusion 150           Minimum distance between correlation peaks.",
"-radius 50               Mask radius (slightly bigger than particle).",
" ",
"Input:",
"-reference file.pif      Input reference projections file.",
" ",
"Output:",
"-output newmod.star      New model file.",
" ",
NULL
}

◆ verbose

int verbose

extern

Functions

Variables