model_multifit.cpp File Reference

Searching for a template in a map and returning multiple hits in a model. More...

#include "rwimg.h"
#include "rwmodel.h"
#include "model_multifit.h"
#include "symmetry.h"
#include "Matrix.h"
#include "linked_list.h"
#include "utilities.h"

Functions
Bmodel *	model_from_densities (Bimage *p, Bimage *ptemp, View *view, double alpha, double alpha_step, double hires, double lores, Bimage *pmask, double threshold)
	Searches a 2D/3D density map for a template. More...
Bmodel *	model_from_densities_for_view (Bimage *p, Bimage *ptemp, View view, double hires, double lores, Bimage *pmask, double threshold)
	Searches a 2D/3D density map for a template using a specific view. More...
Bmodel *	model_from_peaks (Bimage *p, double threshold, int wrap)
	Generates a model from peaks in a map. More...

Variables
int	verbose

Detailed Description

Searching for a template in a map and returning multiple hits in a model.

Author

Bernard Heymann

Date

Created: 20021027

Modified: 20151127

Function Documentation

model_from_densities()

Bmodel * model_from_densities	(	Bimage *	p,
		Bimage *	ptemp,
		View *	view,
		double	alpha,
		double	alpha_step,
		double	hires,
		double	lores,
		Bimage *	pmask,
		double	threshold
	)

Searches a 2D/3D density map for a template.

Parameters

*p	the image.
*ptemp	the template to be searched for.
*view	views.
alpha	rotation around view vector, <0 = use 2*PI (radians).
alpha_step	angular step size around view vector (radians).
hires	high resolution limit.
lores	low resolution limit.
*pmask	mask for cross-correlation (ignored if NULL).
threshold	threshold value, if 0, threshold = FOMmax/2.

Returns

Bmodel* list of solutions.

The template is rotated and cross-correlated to find the best fit.
The views must be calculated externally to allow for custom sets.

model_from_densities_for_view()

Bmodel * model_from_densities_for_view	(	Bimage *	p,
		Bimage *	ptemp,
		View	view,
		double	hires,
		double	lores,
		Bimage *	pmask,
		double	threshold
	)

Searches a 2D/3D density map for a template using a specific view.

Parameters

*p	the image.
*ptemp	the template to be searched for.
view	view.
hires	high resolution limit.
lores	low resolution limit.
*pmask	mask for cross-correlation (ignored if NULL).
threshold	threshold value, if 0, threshold = FOMmax/2.

Returns

Bmodel* list of solutions.

The template is rotated to the view and cross-correlated to find
a set of high-scoring fits.
The views must be calculated externally to allow for custom sets.

model_from_peaks()

Bmodel * model_from_peaks	(	Bimage *	p,
		double	threshold,
		int	wrap
	)

Generates a model from peaks in a map.

Parameters

*p	cross-correlation map.
threshold	threshold value, if 0, threshold = FOMmax/2.
wrap	flag to wrap around image boundaries.

Returns

Bmodel* list of peaks.

Peaks found in the map are returned in the FOM block.
A component is generated from each peak with a FOM above the threshold.

Variable Documentation

verbose

int verbose

extern