rwmgRELION.cpp File Reference

Library routines to read and write micrograph parameters in RELION STAR format. More...

#include "mg_processing.h"
#include "star.h"
#include "mg_tags.h"
#include "rwimg.h"
#include "string_util.h"
#include "utilities.h"
#include <sys/stat.h>
#include <fcntl.h>

Functions
int	relion_to_project (Bstar &star, Bproject *project)
int	project_to_relion (Bproject *project, Bstar &star, int mg_select, int rec_select)
int	read_project_relion (Bstring &filename, Bproject *project)
	Reading micrograph parameters from a Relion file. More...
int	write_project_relion (Bstring &filename, Bproject *project, int mg_select, int rec_select)
	Writing micrograph parameters to a Relion file. More...
int	project_split_particles (Bproject *project, Bstring partfile, Bstring path, Bstring partext)
	Modifies some micrograph parameters. More...

Variables
int	verbose

Detailed Description

Library routines to read and write micrograph parameters in RELION STAR format.

Author

Bernard Heymann

Date

Created: 20061101

Modified: 20220323

Function Documentation

project_split_particles()

int project_split_particles	(	Bproject *	project,
		Bstring	partfile,
		Bstring	path,
		Bstring	partext
	)

Modifies some micrograph parameters.

Parameters

*project	project structure.
partfile	Relion stack of particles file.
path	path to write new particle files.
partext	extension to set the new particle image format.

Returns

int error code (<0 means failure).

project_to_relion()

int project_to_relion	(	Bproject *	project,
		Bstar &	star,
		int	mg_select,
		int	rec_select
	)

read_project_relion()

int read_project_relion	(	Bstring &	filename,
		Bproject *	project
	)

Reading micrograph parameters from a Relion file.

Parameters

&filename	file name (or comma-delimited list).
*project	initialized project structure.

Returns

int error code (<0 means failure).

relion_to_project()

int relion_to_project	(	Bstar &	star,
		Bproject *	project
	)

write_project_relion()

int write_project_relion	(	Bstring &	filename,
		Bproject *	project,
		int	mg_select,
		int	rec_select
	)

Writing micrograph parameters to a Relion file.

Parameters

*filename	file name.
*project	project structure.
mg_select	flag to select micrograph.
rec_select	flag to select reconstruction.

Returns

int error code (<0 means failure).

Variable Documentation

verbose

int verbose

extern