rwmodel_bild.cpp File Reference

Library routines to read and write Chimera BILD model parameters. More...

#include "rwmodel.h"
#include "model_neighbors.h"
#include "model_poly.h"
#include "Color.h"
#include "string_util.h"
#include "utilities.h"
#include "timer.h"
#include <fstream>

Functions
Bcomponent *	component_add_if_not_exist (Vector3< double > loc, Bcomponent **comp, int &number)
Bmodel *	read_model_bild (Bstring *file_list)
	Reads Chimera BILD model parameters. More...
void	bild_color (ofstream &fbld, RGB< float > rgb)
void	bild_color (ofstream &fbld, RGBA< float > rgba)
void	bild_sphere (ofstream &fbld, Vector3< double > loc, double radius)
void	bild_cylinder (ofstream &fbld, Vector3< double > start, Vector3< double > end, double radius)
void	bild_polygon_start (ofstream &fbld, Vector3< double > vertex)
void	bild_polygon_add (ofstream &fbld, Vector3< double > vertex)
void	bild_polygon_end (ofstream &fbld, Vector3< double > vertex)
void	bild_arrow (ofstream &fbld, Vector3< double > start, Vector3< double > end, double cylrad, double conerad, double rho)
int	write_model_bild (Bstring &filename, Bmodel *model, int splt)
	Writes Chimera BILD model parameters. More...
int	model_to_bild_orientations (Bstring &filename, Bmodel *model, int vec_type, int color_type)
	Converts a model into a representation with views. More...
int	model_to_bild_view_sphere (Bstring &filename, Bmodel *model, int color_type)
	Converts a model into a representation with views. More...
int	model_to_bild_force_vectors (Bstring &filename, Bmodel *model, int color_type)
	Converts a model into a representation with views. More...
int	model_to_bild_view_polygons (Bstring &filename, Bmodel *model, int order, int color_type)
	Converts a model into a representation with view polygons. More...
int	model_to_bild_polygons (Bstring &filename, Bmodel *model, int color_type)
	Converts a model into a bild polygon representation. More...
int	model_to_bild_neighbor_planes (Bstring &filename, Bmodel *model, int color_type)
	Converts a model into a bild neighbor plane representation. More...

Variables
int	verbose

Detailed Description

Library routines to read and write Chimera BILD model parameters.

Author

Bernard Heymann

Date

Created: 20080521

Modified: 20221115

Function Documentation

bild_arrow()

void bild_arrow	(	ofstream &	fbld,
		Vector3< double >	start,
		Vector3< double >	end,
		double	cylrad,
		double	conerad,
		double	rho
	)

bild_color() [1/2]

void bild_color	(	ofstream &	fbld,
		RGB< float >	rgb
	)

bild_color() [2/2]

void bild_color	(	ofstream &	fbld,
		RGBA< float >	rgba
	)

bild_cylinder()

void bild_cylinder	(	ofstream &	fbld,
		Vector3< double >	start,
		Vector3< double >	end,
		double	radius
	)

bild_polygon_add()

void bild_polygon_add	(	ofstream &	fbld,
		Vector3< double >	vertex
	)

bild_polygon_end()

void bild_polygon_end	(	ofstream &	fbld,
		Vector3< double >	vertex
	)

bild_polygon_start()

void bild_polygon_start	(	ofstream &	fbld,
		Vector3< double >	vertex
	)

bild_sphere()

void bild_sphere	(	ofstream &	fbld,
		Vector3< double >	loc,
		double	radius
	)

component_add_if_not_exist()

Bcomponent * component_add_if_not_exist	(	Vector3< double >	loc,
		Bcomponent **	comp,
		int &	number
	)

model_to_bild_force_vectors()

int model_to_bild_force_vectors	(	Bstring &	filename,
		Bmodel *	model,
		int	color_type
	)

Converts a model into a representation with views.

Parameters

&filename	bild format file name.
*model	model structure.
color_type	flag to color components.

Returns

int 0, <0 on error.

A sphere is drawn for every component with a cylinder indicating its view.

model_to_bild_neighbor_planes()

int model_to_bild_neighbor_planes	(	Bstring &	filename,
		Bmodel *	model,
		int	color_type
	)

Converts a model into a bild neighbor plane representation.

Parameters

&filename	bild format file name.
*model	model structure.
color_type	flag to color planes.

Returns

int 0, <0 on error.

Color scheme types:
    1   spectrum/rainbow.
    2   fom.

model_to_bild_orientations()

int model_to_bild_orientations	(	Bstring &	filename,
		Bmodel *	model,
		int	vec_type,
		int	color_type
	)

Converts a model into a representation with views.

Parameters

&filename	bild format file name.
*model	model structure.
vec_type	0=views, 1=vectors, 2=velocity vectors.
color_type	flag to color components.

Returns

int 0, <0 on error.

A sphere is drawn for every component with a cylinder indicating its view.

model_to_bild_polygons()

int model_to_bild_polygons	(	Bstring &	filename,
		Bmodel *	model,
		int	color_type
	)

Converts a model into a bild polygon representation.

Parameters

&filename	bild format file name.
*model	model structure.
color_type	flag to color polygons.

Returns

int 0, <0 on error.

Color scheme types:
    1   spectrum/rainbow.
    2   fom.

model_to_bild_view_polygons()

int model_to_bild_view_polygons	(	Bstring &	filename,
		Bmodel *	model,
		int	order,
		int	color_type
	)

Converts a model into a representation with view polygons.

Parameters

&filename	bild format file name.
*model	model structure.
order	polygon order.
color_type	flag to color components.

Returns

int 0, <0 on error.

A sphere is drawn for every component with a cylinder indicating its view.

model_to_bild_view_sphere()

int model_to_bild_view_sphere	(	Bstring &	filename,
		Bmodel *	model,
		int	color_type
	)

Converts a model into a representation with views.

Parameters

&filename	bild format file name.
*model	model structure.
color_type	flag to color components.

Returns

int 0, <0 on error.

A sphere is drawn for every component with a cylinder indicating its view.

read_model_bild()

Bmodel * read_model_bild

(

Bstring *

file_list

)

Reads Chimera BILD model parameters.

Parameters

*file_list

list of model parameter file names.

Returns

Bmodel* model parameters.

write_model_bild()

int write_model_bild	(	Bstring &	filename,
		Bmodel *	model,
		int	splt
	)

Writes Chimera BILD model parameters.

Parameters

&filename	model parameter file name.
*model	model parameters.
splt	flag to split into separate models.

Returns

int models written.

Variable Documentation

verbose

int verbose

extern