COMETS Analytics Tutorial
Introduction
Overview
1
Get Started with the Sample File
1.1
Sample Input File
1.2
Quick Analysis
2
Conduct Cohort Data Analyses
2.1
Step 1 Data Preparation
2.1.1
Metabolites
2.1.2
Subject Metabolites
2.1.3
Subject Data
2.1.4
VarMap
2.1.5
Models
2.2
Step 2 Harmonization
2.2.1
Harmonization File
2.3
Step 3 Data and Model Integrity
2.4
Step 4 Run Models
2.4.1
Interactive Mode
2.4.2
Batch Mode
2.5
Step 5 Correlation Analyses Output
2.5.1
Metabolite Tagging
2.5.2
Create Subset of ‘Tagged’ Metabolites
2.5.3
Create A Heatmap
2.5.4
The Heatmap
2.5.5
The Heatmap (2)
2.5.6
Annotations and Hierarchical Clustering
2.6
Step 6 Send for Meta-analyses
3
Manual
3.1
Registration
3.2
Data Preparation
3.2.1
Create Input
3.3
Harmonization details
3.3.1
Preharmonization
3.4
Integrity checks
3.4.1
Data
3.4.2
Models
3.5
Correlation Analyses
3.5.1
Details
3.5.2
Output
FAQ
References
Comets Analytics
COMETS Analytics Tutorial
References