AminoAcidPhysicalLocation

: Public Class

Created:	10/17/2008 12:06:08 AM
Modified:	3/25/2015 4:09:55 PM

Project:
Author:
Version:	1.0
Phase:	1.0
Status:
Complexity:	Easy
Difficulty:
Priority:
Multiplicity:
Advanced:
UUID:	{C664BC04-AE15-4a01-AC3F-CDCA0EC3CC63}
Appears In:	UML-Based Comprehensive BRIDG Model Diagram, View MB: Molecular Biology

DEFINITION: A position or a region on an amino acid sequence. EXAMPLE(S): amino acids 3 to 10 of TP53 protein, amino acids 102 to 292 of TP53 protein defining a DNA binding region. OTHER NAME(S): NOTE(S):

Attributes
Associations To
Associations From
Tagged Values

Attribute

Public INT.NONNEG
startCoordinate

Details:

Alias:
Initial:
Stereotype:
Ordered:
Range:	Range:0 to 1
Transient:	False
Derived:	False
IsID:	False

Map:LSDAM=AminoAcidPhysicalLocation.startCoordinate
Map:LSDAMv2.2.3Plus=AminoAcidPhysicalLocation.startCoordinate

Notes:

DEFINITION:#lt;br /#gt;#lt;/p#gt;#lt;p#gt;The beginning coordinate of the range (inclusive), given as an integer offset from the start of the sequence.#lt;br /#gt;#lt;/p#gt;#lt;p#gt;#lt;br /#gt;#lt;/p#gt;#lt;p#gt;EXAMPLE(S):#lt;br /#gt;#lt;/p#gt;#lt;p#gt;1 (one)#lt;br /#gt;#lt;/p#gt;#lt;p#gt;#lt;br /#gt;#lt;/p#gt;#lt;p#gt;OTHER NAME(S):#lt;br /#gt;#lt;/p#gt;#lt;p#gt;#lt;br /#gt;#lt;/p#gt;#lt;p#gt;NOTE(S):#lt;br /#gt;#lt;/p#gt;

Public INT.NONNEG
endCoordinate

Details:

Alias:
Initial:
Stereotype:
Ordered:
Range:	Range:0 to 1
Transient:	False
Derived:	False
IsID:	False

Map:LSDAM=AminoAcidPhysicalLocation.endCoordinate
Map:LSDAMv2.2.3Plus=AminoAcidPhysicalLocation.startCoordinate

Notes:

DEFINITION:#lt;br /#gt;#lt;/p#gt;#lt;p#gt;The terminal coordinate of the range (inclusive), given as an integer offset from the start of the sequence.#lt;br /#gt;#lt;/p#gt;#lt;p#gt;#lt;br /#gt;#lt;/p#gt;#lt;p#gt;EXAMPLE(S):#lt;br /#gt;#lt;/p#gt;#lt;p#gt;25#lt;br /#gt;#lt;/p#gt;#lt;p#gt;#lt;br /#gt;#lt;/p#gt;#lt;p#gt;OTHER NAME(S):#lt;br /#gt;#lt;/p#gt;#lt;p#gt;#lt;br /#gt;#lt;/p#gt;#lt;p#gt;NOTE(S):#lt;br /#gt;#lt;/p#gt;

Element	Source Role	Target Role
AminoAcidSequence Class	Name: includingAminoAcidPhysicalLocation	Name: includedAminoAcidSequence
Details: DESCRIPTION:<br /></p><p>Each AminoAcidPhysicalLocation always includes one AminoAcidSequence. Each AminoAcidSequence might be included in one or more AminoAcidPhysicalLocation. <br /></p><p><br /></p><p>DEFINITION:<br /></p><p><br /></p><p>EXAMPLE(S):<br /></p><p><br /></p><p>OTHER NAME(S):<br /></p><p><br /></p><p>NOTE(S):<br /></p>

Element	Source Role	Target Role
AminoAcidSequenceFeature Class	Name: includedAminoAcidSequenceFeature	Name: includingAminoAcidPhysicalLocation
Details: DESCRIPTION:<br /></p><p>Each AminoAcidSequenceFeature always is included in one or more AminoAcidPhysicalLocation. Each AminoAcidPhysicalLocation might include one or more AminoAcidSequenceFeature.<br /></p><p><br /></p><p>DEFINITION:<br /></p><p><br /></p><p>EXAMPLE(S):<br /></p><p><br /></p><p>OTHER NAME(S):<br /></p><p><br /></p><p>NOTE(S):<br /></p>

Tag	Value
Map:LSDAM	AminoAcidPhysicalLocation
Details:
Map:LSDAMv2.2.3Plus	AminoAcidPhysicalLocation
Details: